rs224884913 SNP Detail

Summary

• ID
  rs224884913
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141546877 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTCTTCTG TCGACCCCTC
  CCTTTCCGGT CCAGGTGACC CTGTCCCTTC CACAAGGTTG CTGAATTTGG CCAGGTTAGT
  TTGCATTGTG TCCTCAGTTG ATTGGTTGGT GGTCTGGCTA CTTACTGGTG ATTGGTTCGG
  GGTGAGCATC TGACTCAACC CTAAAGCCAA TGAGCTCCTT GCTCTGGGAG TCTGGCGTGG
  K
  CAGTGGCTGC CATTTTCTTT TGTTGGAGAA GGATGAGGCA GAAAAGACTC GGAAGGAGAG
  TTTCTGGTTT CTTCCAGGCT CCACACGGCC TTGATCTAGA ATGTTCCTGA CATCTAGCTA
  TGTGTCTGCC CTTGGCTTAG AATTCCTCTT TTTGCGGGGC TAGTTCCACA GGTTTCTCTT
  ACTTTCCTAT GAGAAAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321390080	CHEV_4_141375481	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224884913					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141546877 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	489 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	285 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1667 bp downstream
Tssr40106	transcription start site region 40106	1636 bp downstream
Tssr40107	transcription start site region 40107	1584 bp downstream
Tssr40108	transcription start site region 40108	522 bp downstream
Tssr40109	transcription start site region 40109	487 bp downstream
Tssr40110	transcription start site region 40110	464 bp downstream
Tssr40111	transcription start site region 40111	1759 bp upstream
Tssr40112	transcription start site region 40112	1787 bp upstream
Tssr40113	transcription start site region 40113	1816 bp upstream
Tssr44369	transcription start site region 44369	1669 bp upstream
Tssr44370	transcription start site region 44370	1629 bp upstream
Tssr44371	transcription start site region 44371	1598 bp upstream
Tssr44372	transcription start site region 44372	1567 bp upstream
Tssr44373	transcription start site region 44373	1280 bp upstream
Tssr44374	transcription start site region 44374	434 bp upstream
Tssr44375	transcription start site region 44375	201 bp upstream
Tssr44376	transcription start site region 44376	183 bp upstream
Tssr44377	transcription start site region 44377	418 bp downstream
Tssr44378	transcription start site region 44378	537 bp downstream
Tssr44379	transcription start site region 44379	1786 bp downstream
Tssr44380	transcription start site region 44380	1798 bp downstream