rs224886750 SNP Detail

Summary

• ID
  rs224886750
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115220312 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGAAGCTG ATGTTAATGT
  GCTTGTTGTA GGTAGCAGCA CAGCCCGCCG CGGCGCAATT GGTCGGCATT TCCCCGGGCC
  CCTCATTCGG CGCCACCTTA CGCCACTTCG GAGGCGCTGC CCGCTAAGCA AGCTTCTGTC
  AAACGCTAGA CAAACGAGGC AGGCGACCCC GCGCCGCCAG CTCGGTGCAG AGCGCGGGGA
  R
  GGCAGAGGGG CGTGCACAGT ACCGGGGTGG GAGGGAGGGC CCACTCTCCT GTCTCTTTAT
  TAATATGGCG GGCTTAGGCC TGCAGAGCCA ACGTGCCGGA GCTCCGGGCG CAGACAGTCG
  CCTTCACCAA CATGGCGGCC ACACCCGCTC CCCGCCCTCC CCTACCTCCC GGGGTCCCAA
  AGAGACTAGG TCCAGCGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484722	CHEV_10_114821463	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224886750					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115220312 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	within coordinates
Rr402239	regulatory region 402239	321 bp upstream
Rr439213	regulatory region 439213	8 bp distal
Rr439214	regulatory region 439214	93 bp distal
Rr439215	regulatory region 439215	within coordinates
Rr439216	regulatory region 439216	552 bp proximal
Rr439217	regulatory region 439217	815 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	457 bp downstream
Tssr95814	transcription start site region 95814	514 bp upstream
Tssr95815	transcription start site region 95815	544 bp upstream
Tssr95816	transcription start site region 95816	638 bp upstream
Tssr99330	transcription start site region 99330	71 bp upstream
Tssr99331	transcription start site region 99331	32 bp upstream
Tssr99332	transcription start site region 99332	within coordinates
Tssr99333	transcription start site region 99333	69 bp downstream
Tssr99334	transcription start site region 99334	109 bp downstream
Tssr99335	transcription start site region 99335	344 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	552 bp upstream