rs224896101 SNP Detail

Summary

• ID
  rs224896101
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91037507 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    caggtctca ctctctatgt agttctggtc
  aagccagctt gaactctgtg tggtctcaca gagatctact tgcctctgcc tcccaagggc
  tgggattaaa ggtgtgtgct aaccacctgc cattcttttt aaagatttat ttattttatc
  Y
  atatgagtac actgtagctg tcttcagata caccagaaga gggcatcata tcctattaca
  gatggttgtg agccaccaaa tagttgctgg gaattgaact caggacctct ggaagagcag
  tcagcgctct taaccactga gccatctctc                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320391971	CHEV_2_91047319	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224896101					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91037507 () rs orientation: forward

Symbol	Name	Function Class
Acp2	acid phosphatase 2, lysosomal	within coordinates
D11Hjk15	DNA segment, Chr 11, H. Jockusch 15	443 bp proximal
Tssr18872	transcription start site region 18872	1333 bp downstream
Tssr18873	transcription start site region 18873	1116 bp downstream
Tssr18874	transcription start site region 18874	687 bp downstream
Tssr18875	transcription start site region 18875	636 bp downstream
Tssr18876	transcription start site region 18876	605 bp downstream
Tssr18877	transcription start site region 18877	342 bp downstream
Tssr18878	transcription start site region 18878	648 bp upstream
Tssr18879	transcription start site region 18879	1707 bp upstream