rs224899334 SNP Detail

Summary

• ID
  rs224899334
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115218388 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGTCCTGA AACTTGTTTT
  GTAGACAAGG CTGGCCTCAA ACTCACAGAA CTCACTTGCC TCTGCCTGAA GGTATGCATC
  ACCCAACCTG CTTTCCTCTT TTTGAGCCAA GGATTTACTC TGTAGTCCAG ACAGGCCTTG
  ACTTTAGGAT GCATCCCTGT GGCTCAGACT CCTGAGTTCT AAGATCACAG CTGTGAGCCA
  K
  CGCACCAAGC TCTCTGTTGT ACAACTCTTA TACCTTGGAC TTAGGGGCTA GACTCCTCCC
  TTTCATGGTC CACATCTGAT TAAGTCCAGT AAATTCTCCT TAAATATTTC CCCAAATCTG
  TCCACTTCTC TTCAGCTTTA CTGCCAACAG CATCTTATTC TGGACCCCTG AATGGATTCC
  TCATATTTAT TTACACATTC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484705	CHEV_10_114819539	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224899334					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115218388 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	1552 bp proximal
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	1810 bp proximal
Rr439215	regulatory region 439215	1917 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	1434 bp upstream
Tssr99330	transcription start site region 99330	1843 bp downstream
Tssr99331	transcription start site region 99331	1854 bp downstream
Tssr99332	transcription start site region 99332	1905 bp downstream
Tssr99333	transcription start site region 99333	1993 bp downstream