rs224901809 SNP Detail

Summary

• ID
  rs224901809
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:36347271 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGTCTGGA CTGAAATTCA
  CTGAGCCGCC CACACTTCCT GCTGCGGTTT CAATCTCGAG CTGCTCTGGG CCCATTTGTT
  GTGACAGCTG TCAGCAGCAG CTTCTCGGCC GCGGGCCCCT CCCTGCCCCG TGCCAGCCCA
  GCGCTTCGCT TCTCAGAAAC CGAGGCGCCC GGGCCGCGCG CAGCGCTTCC CACTGCGGCC
  R
  CGATTCCTGA AAGTGACTGC GCGGGTTTTG AAGAAATTGC TCAATGCGCT TTGAAGAATC
  AACGGTTCCT CTTTTCTGCC AAGGGACATG CTGATGGTTT GACGGTCACA CGCTTCAGAT
  CCCCTGCTCC TTCTCTCTTC TCTTTCCTTT TTCTTTTTGT TTCTTTTTCT TTCCAACCCC
  CAGCAGGAAA GACGGTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349247580	MGP_WTSI_1_36365035	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224901809					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349247580	MGP_WTSI_1_36365035	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:36347271 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Arid5a	AT-rich interaction domain 5A			Intron
				Noncoding-Transcript-Variant
Cpgi139	CpG island 139			within coordinates
Gm70585	predicted gene, 70585			566 bp upstream
Rr366864	regulatory region 366864			24 bp downstream
Rr395991	regulatory region 395991			357 bp downstream
Rr409283	regulatory region 409283			577 bp distal
Rr409284	regulatory region 409284			411 bp distal
Rr409285	regulatory region 409285			within coordinates
Tssr6253	transcription start site region 6253			455 bp downstream
Tssr6254	transcription start site region 6254			427 bp downstream
Tssr6255	transcription start site region 6255			411 bp downstream
Tssr6256	transcription start site region 6256			115 bp downstream
Tssr6257	transcription start site region 6257			41 bp downstream
Tssr6258	transcription start site region 6258			77 bp upstream
Tssr11252	transcription start site region 11252			1429 bp downstream