rs224909406 SNP Detail

Summary

• ID
  rs224909406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:28527540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACCCAATGA TTTTTTTTTT
  AATTTTATTT TATGTGCATT GGTGTTTTAT GTGCCTGTGT GAGGGTGTCA GATAGCCTGG
  AACTGGAGTT AGAGACAGTT GTGAGCTGCC ATGTGGGTGC TAGGAATTGA ACCCGGGTCC
  TCTGGAAGAG CAGCTGGTGC TCTTACCCCC GAGCCATGTC TCCAGCTCCC ACCCGGTGAT
  Y
  ATTTTTGCTT CAGGTGTTTT GTTTGCAGTC TTCAGATTTC TAGTTGGTTC TTTGTGATGA
  GGCCTCAGTG ACTTTCTAGA TCCTCCTGCC TTGACCTGCT GTCCAGCCTG CCTCTTGTTT
  ATTCTATTTT GTCTTATATT TTTGCACATA TGTGTGAGTA CATTTACGTG TGTGTACACA
  TGGATAAAGG CACCAGCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370868057	MGP_WTSI_7_29613134	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	T	T	T	C	C	C	C	T	T	C	T	C	C	C	C	T	T	C	C	C	T	C	T	T	C	C	T	T	C	C	C	C	T	C	T	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224909406					SNP	C	C	C	C	C	C	T	T	T	C	C	C	C	T	T	C	T	C	C	C	C	T	T	C	C	C	T	C	T	T	C	C	T	T	C	C	C	C	T	C	T	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370868057	MGP_WTSI_7_29613134	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28527540 () rs orientation: forward

Symbol	Name	Function Class
Ech1	enoyl coenzyme A hydratase 1, peroxisomal	within coordinates
Rr155798	regulatory region 155798	940 bp distal
Rr167384	regulatory region 167384	1539 bp distal
Tssr65551	transcription start site region 65551	591 bp downstream
Tssr65552	transcription start site region 65552	483 bp downstream
Tssr65553	transcription start site region 65553	1892 bp upstream
Tssr65554	transcription start site region 65554	1972 bp upstream
Tssr65555	transcription start site region 65555	1992 bp upstream