rs224916575 SNP Detail

Summary

• ID
  rs224916575
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:5538458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAGGGCAC CAGCTCATGG
  AATGACCTCC TTTCGCCATG TACTATGCAG TAAGAGGCTA GCTCGGTTTG CACGGCCTTT
  CCTTAGAACC GCCCCCATTC GCCCGCCGGC ACCAGCCTTT TGGACAGGCC CCACCCAGGC
  CATGGAGCTT TGACCCACCC TTTCCTCTCA CCCAAAAATT CGAGAGCAGA CTCTTTTTTT
  K
  TGTGTACTGA CTGTTAAAAA GGAGGACAGC GCCCCCTGTG ACTGGGAGGG CCGGTGTGGG
  GGTACACTCA GAAACCTGAA CTTGGCTTGC TTCAAGGTCT CATAAGGCTA TTTCAGGCTC
  ACTATCGTAG AAGAGGCTGG GAAAAAGAGG GCTTAAGAAA AGTGGAGGAG AGGGACGGAC
  ACAAGTCCAA GAATATTTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401656588	MGP_WTSI_19_5488430	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224916575					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401656588	MGP_WTSI_19_5488430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:5538458 () rs orientation: forward

Symbol	Name	Function Class
1700061A03Rik	RIKEN cDNA 1700061A03 gene	314 bp downstream
Cpgi10453	CpG island 10453	60 bp distal
Cpgi10454	CpG island 10454	484 bp proximal
Cpgi10455	CpG island 10455	1823 bp proximal
Gm59148	predicted gene, 59148	756 bp upstream
Mus81	MUS81 structure-specific endonuclease subunit	within coordinates
Rr363568	regulatory region 363568	within coordinates
Rr370432	regulatory region 370432	within coordinates
Rr405805	regulatory region 405805	569 bp upstream
Rr405806	regulatory region 405806	1743 bp upstream
Tssr154437	transcription start site region 154437	888 bp upstream
Tssr157605	transcription start site region 157605	34 bp upstream
Tssr157606	transcription start site region 157606	511 bp downstream
Tssr157607	transcription start site region 157607	530 bp downstream
Tssr157608	transcription start site region 157608	616 bp downstream
Tssr157609	transcription start site region 157609	647 bp downstream