rs224917031 SNP Detail

Summary

• ID
  rs224917031
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135694883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGGTTGTTG GGACCAACAG AGCGTAGATC
  CGAAGAGAAT GTGTTTTTGG AAGCCGGGCC TTTTGCCAAG TGAGCAGAGC AGGCCCTTTC
  CCTAGGGCAC CAGGCAGGAG GGTCCTTAAT GTAACCCAAG TGTCGGAGAG GAAGATGGGT
  S
  GGAGCACGGA GAGAGAGCAC GGGTGGGATA GGCCTCCTCA GAGATTGGTT CACTCACCAT
  AGGACTCCTG CGTTGTATGA CTGTCTTCCA GAATGAATGC ATGCTGGAGA ATGTAAGTGT
  TGAACTGCGA TGACAACTCA CTACGGTGTA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319993143	CHEV_1_137663722	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224917031					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135694883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi797	CpG island 797	167 bp distal
Phlda3	pleckstrin homology like domain, family A, member 3	within coordinates
Rr372092	regulatory region 372092	198 bp downstream
Rr419269	regulatory region 419269	1016 bp distal
Tssr223	transcription start site region 223	1066 bp downstream
Tssr224	transcription start site region 224	944 bp downstream
Tssr8974	transcription start site region 8974	970 bp downstream
Tssr8975	transcription start site region 8975	937 bp downstream
Tssr8976	transcription start site region 8976	920 bp downstream
Tssr8977	transcription start site region 8977	905 bp downstream
Tssr8978	transcription start site region 8978	888 bp downstream
Tssr8979	transcription start site region 8979	664 bp upstream