rs224917473 SNP Detail

Summary

• ID
  rs224917473
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40692896 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATTCACTT ATTGTGAAAC
  TATCTTTGTC CTGGCTTGCT TTTTGTTGCT ATGGCAAACA ACATGACCAA AAGCAGCCTG
  GAAAGAAAAG GGTTTCTTTC CCCCTACAGC TTACAGTCCG TTACCAAGGG AAGGCAGGAA
  AGGAAAAGAA TTCAAGGCAG GAAAGGAATT CAAGGCAGGA AAGGAATTCA AGGCAGGAAA
  R
  GAATTCAAGG CAGGAAAGGA ATTCAAGGCA GGAAGCTGGG GGTGCCAACT GAAGCAGAGG
  CCATGGAGGG GTGCTGCTTA CTGGTTTGCT CCTCACAGCT TGCTCAGCCT GCTTTCTAAT
  AGAACCCAGC ATCGCCTTCC CAGGAGTGGC ACCACCCACA ATGAGCAGTA CTCTCAGACA
  GCCATCATTA GTCCAGAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
ss377322188	MGP_WTSI_9_40589683	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CZECHII/EiJ	JF1/MsJ	MOLF/EiJ	PWK/PhJ	SPRET/EiJ
rs224917473					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377322188	MGP_WTSI_9_40589683	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40692896 () rs orientation: forward

Symbol	Name	Function Class
Clmp	CXADR-like membrane protein	within coordinates
Cpgi21601	CpG island 21601	651 bp proximal
Gm16096	predicted gene 16096	within coordinates
Rr676920	regulatory region 676920	1788 bp proximal
Tssr84467	transcription start site region 84467	1235 bp downstream
Tssr84468	transcription start site region 84468	510 bp downstream
Tssr84469	transcription start site region 84469	423 bp downstream
Tssr84470	transcription start site region 84470	677 bp upstream
Tssr84471	transcription start site region 84471	804 bp upstream
Tssr88968	transcription start site region 88968	1455 bp downstream