rs224917747 SNP Detail

Summary

• ID
  rs224917747
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156077606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             CCCAGAATGA TTGACACGTG ACCCCGCGCG CCATTCCTAT TGGTTGCTTC
  K
  CAGAGGCTGC TTCCGCCCAT AAGAAAGATG GCGGCTTCGA GATTCGTACC           
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444389	CHEV_4_155367258	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224917747					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156077606 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
B3galt6	UDP-Gal:betaGal beta 1,3-galactosyltransferase, polypeptide 6			500 bp upstream
Cpgi15496	CpG island 15496			within coordinates
Rr377473	regulatory region 377473			within coordinates
Rr606629	regulatory region 606629			1787 bp distal
Rr606630	regulatory region 606630			554 bp distal
Rr606631	regulatory region 606631			within coordinates
Rr606632	regulatory region 606632			451 bp distal
Rr606633	regulatory region 606633			177 bp distal
Rr606634	regulatory region 606634			104 bp proximal
Rr606635	regulatory region 606635			239 bp proximal
Sdf4	stromal cell derived factor 4			Intron
				mRNA-UTR
				Splice-Site
Tssr1404	transcription start site region 1404			203 bp downstream
Tssr40748	transcription start site region 40748			736 bp downstream
Tssr40749	transcription start site region 40749			within coordinates
Tssr40750	transcription start site region 40750			81 bp upstream
Tssr40751	transcription start site region 40751			156 bp upstream
Tssr40752	transcription start site region 40752			299 bp upstream
Tssr44987	transcription start site region 44987			807 bp upstream
Tssr44988	transcription start site region 44988			475 bp upstream