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rs224919233 SNP Detail
Summary
  • ID
    rs224919233
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128454 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          TCCTCCTCCA TAATCTTTTT TCTCCTATCT TCTCCTACTT
CCTTTCTTTT CCTCTCATTT GCTCTTCCAT CTCCTCCCCT ATTTTCAACT CCTCTTTCTC
Y
TCCCATCCTT CTACGATACA CCTATCCCCC CTCCACCTGT CATCAACCTC CTCCACATCT
CCCCTCTCCC TCCATCTTTC TCCTCCTTCG TCTCTTCAT                       

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156108 MGP_WTSI_7_51734400 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs224919233 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156108 MGP_WTSI_7_51734400 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128454 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1651 bp downstream
Tssr2225 transcription start site region 2225 1611 bp downstream
Tssr2226 transcription start site region 2226 1085 bp downstream
Tssr2227 transcription start site region 2227 10 bp downstream
Tssr2228 transcription start site region 2228 1048 bp upstream
Tssr2229 transcription start site region 2229 1324 bp upstream
Tssr2230 transcription start site region 2230 1503 bp upstream
Tssr2231 transcription start site region 2231 1636 bp upstream
Tssr2232 transcription start site region 2232 1811 bp upstream
Tssr2233 transcription start site region 2233 1844 bp upstream
Tssr66235 transcription start site region 66235 1988 bp downstream
Tssr66236 transcription start site region 66236 1961 bp downstream
Tssr66237 transcription start site region 66237 1940 bp downstream
Tssr66238 transcription start site region 66238 1921 bp downstream
Tssr66239 transcription start site region 66239 1870 bp downstream
Tssr66240 transcription start site region 66240 1789 bp downstream
Tssr66241 transcription start site region 66241 1777 bp downstream
Tssr66242 transcription start site region 66242 1697 bp downstream
Tssr66243 transcription start site region 66243 1683 bp downstream
Tssr66244 transcription start site region 66244 1632 bp downstream
Tssr66245 transcription start site region 66245 1570 bp downstream
Tssr66246 transcription start site region 66246 1542 bp downstream
Tssr66247 transcription start site region 66247 1495 bp downstream
Tssr66248 transcription start site region 66248 1454 bp downstream
Tssr66249 transcription start site region 66249 1431 bp downstream
Tssr66250 transcription start site region 66250 1412 bp downstream
Tssr66251 transcription start site region 66251 1387 bp downstream
Tssr66252 transcription start site region 66252 1356 bp downstream
Tssr66253 transcription start site region 66253 1328 bp downstream
Tssr66254 transcription start site region 66254 1280 bp downstream
Tssr66255 transcription start site region 66255 1253 bp downstream
Tssr66256 transcription start site region 66256 1204 bp downstream
Tssr66257 transcription start site region 66257 1193 bp downstream
Tssr66258 transcription start site region 66258 1150 bp downstream
Tssr66259 transcription start site region 66259 1114 bp downstream
Tssr66260 transcription start site region 66260 1007 bp downstream
Tssr66261 transcription start site region 66261 986 bp downstream
Tssr66262 transcription start site region 66262 979 bp downstream
Tssr66263 transcription start site region 66263 967 bp downstream
Tssr66264 transcription start site region 66264 943 bp downstream
Tssr66265 transcription start site region 66265 900 bp downstream
Tssr66266 transcription start site region 66266 883 bp downstream
Tssr66267 transcription start site region 66267 846 bp downstream
Tssr66268 transcription start site region 66268 830 bp downstream
Tssr66269 transcription start site region 66269 794 bp downstream
Tssr66270 transcription start site region 66270 759 bp downstream
Tssr66271 transcription start site region 66271 727 bp downstream
Tssr66272 transcription start site region 66272 675 bp downstream
Tssr66273 transcription start site region 66273 657 bp downstream
Tssr66274 transcription start site region 66274 652 bp downstream
Tssr66275 transcription start site region 66275 632 bp downstream
Tssr66276 transcription start site region 66276 612 bp downstream
Tssr66277 transcription start site region 66277 592 bp downstream
Tssr66278 transcription start site region 66278 548 bp downstream
Tssr66279 transcription start site region 66279 503 bp downstream
Tssr66280 transcription start site region 66280 481 bp downstream
Tssr66281 transcription start site region 66281 441 bp downstream
Tssr66282 transcription start site region 66282 424 bp downstream
Tssr66283 transcription start site region 66283 410 bp downstream
Tssr66284 transcription start site region 66284 398 bp downstream
Tssr66285 transcription start site region 66285 384 bp downstream
Tssr66286 transcription start site region 66286 345 bp downstream
Tssr66287 transcription start site region 66287 309 bp downstream
Tssr66288 transcription start site region 66288 284 bp downstream
Tssr66289 transcription start site region 66289 202 bp downstream
Tssr66290 transcription start site region 66290 164 bp downstream
Tssr66291 transcription start site region 66291 138 bp downstream
Tssr66292 transcription start site region 66292 106 bp downstream
Tssr66293 transcription start site region 66293 84 bp downstream
Tssr66294 transcription start site region 66294 60 bp downstream
Tssr66295 transcription start site region 66295 202 bp upstream
Tssr66296 transcription start site region 66296 335 bp upstream
Tssr66297 transcription start site region 66297 378 bp upstream
Tssr66298 transcription start site region 66298 403 bp upstream
Tssr66299 transcription start site region 66299 472 bp upstream
Tssr66300 transcription start site region 66300 479 bp upstream
Tssr66301 transcription start site region 66301 503 bp upstream
Tssr66302 transcription start site region 66302 517 bp upstream
Tssr66303 transcription start site region 66303 558 bp upstream
Tssr66304 transcription start site region 66304 566 bp upstream
Tssr66305 transcription start site region 66305 576 bp upstream
Tssr66306 transcription start site region 66306 610 bp upstream
Tssr66307 transcription start site region 66307 667 bp upstream
Tssr66308 transcription start site region 66308 720 bp upstream
Tssr66309 transcription start site region 66309 741 bp upstream
Tssr66310 transcription start site region 66310 779 bp upstream
Tssr66311 transcription start site region 66311 856 bp upstream
Tssr66312 transcription start site region 66312 872 bp upstream
Tssr66313 transcription start site region 66313 893 bp upstream
Tssr66314 transcription start site region 66314 901 bp upstream
Tssr66315 transcription start site region 66315 921 bp upstream
Tssr66316 transcription start site region 66316 980 bp upstream
Tssr66317 transcription start site region 66317 992 bp upstream
Tssr66318 transcription start site region 66318 1037 bp upstream
Tssr66319 transcription start site region 66319 1060 bp upstream
Tssr66320 transcription start site region 66320 1087 bp upstream
Tssr66321 transcription start site region 66321 1105 bp upstream
Tssr66322 transcription start site region 66322 1125 bp upstream
Tssr66323 transcription start site region 66323 1171 bp upstream
Tssr66324 transcription start site region 66324 1200 bp upstream
Tssr66325 transcription start site region 66325 1230 bp upstream
Tssr66326 transcription start site region 66326 1271 bp upstream
Tssr66327 transcription start site region 66327 1285 bp upstream
Tssr66328 transcription start site region 66328 1301 bp upstream
Tssr66329 transcription start site region 66329 1340 bp upstream
Tssr66330 transcription start site region 66330 1359 bp upstream
Tssr66331 transcription start site region 66331 1373 bp upstream
Tssr66332 transcription start site region 66332 1394 bp upstream
Tssr66333 transcription start site region 66333 1442 bp upstream
Tssr66334 transcription start site region 66334 1454 bp upstream
Tssr66335 transcription start site region 66335 1463 bp upstream
Tssr66336 transcription start site region 66336 1472 bp upstream
Tssr66337 transcription start site region 66337 1490 bp upstream
Tssr66338 transcription start site region 66338 1546 bp upstream
Tssr66339 transcription start site region 66339 1597 bp upstream
Tssr66340 transcription start site region 66340 1642 bp upstream
Tssr66341 transcription start site region 66341 1687 bp upstream
Tssr66342 transcription start site region 66342 1749 bp upstream
Tssr66343 transcription start site region 66343 1781 bp upstream
Tssr66344 transcription start site region 66344 1926 bp upstream
Tssr66345 transcription start site region 66345 1959 bp upstream
Tssr72199 transcription start site region 72199 1547 bp upstream
Tssr72200 transcription start site region 72200 589 bp upstream
Tssr72201 transcription start site region 72201 79 bp upstream
Tssr72202 transcription start site region 72202 763 bp downstream
Tssr72203 transcription start site region 72203 1149 bp downstream
Tssr72204 transcription start site region 72204 1745 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory