rs224920322 SNP Detail

Summary

• ID
  rs224920322
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78231508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCACAG AACAATGGTC
  ATGGGGAGAC ACCAGTGCCA TGAGAGAAGA GGCTATAGGG AACAGCATGG CTGCTTACCT
  CAGGAGCTTT AGGGCTAAGG GAACACAACC CCTAGGATGC CTCTTCTTTC TTGGAGTCAG
  AGGCCTGAGC TGGGCCCTAC CAGGGGGACA TTCTTCCCAT GTCCAGAGCT TATGGAAGAC
  W
  CCATATGCAC ATGTGTCCTT CCTGAGGTGC CACATTCACA GACACAAATG CCCTTTCCTT
  TGTAGGATGG AGGTAAAGGT CTCTGGCCTC CTGGCAGCAT GGCAGCCTTC GCCACTAAGA
  ACCCCGCTCT CCAGGGGCCA CAGAGCAGGC TTCTTGCTGA GCAACAGGGG TGAGTGTTTG
  GGCTCTGACC CTTGGGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394652027	MGP_WTSI_15_78177738	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224920322					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652027	MGP_WTSI_15_78177738	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78231508 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1291 bp upstream
Rr505249	regulatory region 505249	1080 bp proximal
Tssr131931	transcription start site region 131931	1813 bp downstream
Tssr131932	transcription start site region 131932	759 bp upstream
Tssr131933	transcription start site region 131933	843 bp upstream
Tssr131934	transcription start site region 131934	907 bp upstream
Tssr131935	transcription start site region 131935	972 bp upstream
Tssr131936	transcription start site region 131936	1638 bp upstream
Tssr131937	transcription start site region 131937	1665 bp upstream
Tssr131938	transcription start site region 131938	1719 bp upstream
Tssr131939	transcription start site region 131939	1787 bp upstream
Tssr131940	transcription start site region 131940	1860 bp upstream
Tssr131941	transcription start site region 131941	1954 bp upstream
Tssr131942	transcription start site region 131942	1992 bp upstream