rs224924117 SNP Detail

Summary

• ID
  rs224924117
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:24571162 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGGGCAAA CCCGGGGCAC
  CTGCAGGGGC GGCCCAGTGC GCACGCGCGC TCCGACGCGC CCCCCCACCC CCTCCAGGAG
  CCGGAGCTTC CTGGTGCGTT CTTCCACCCG CGCCTGTCGC AGGCGCCTCC TCTCTGCCCC
  GCCGCCTCAG TTGTCAGCTT CGGCCGCAAC CGCCCCAGCA AGGCTGGAGC AGGACCGGGA
  R
  TCTAAGGGAG GGAACCTGGC GAGAGAGCTG CGCAGACCGC CGCCACCCTG GCGCTGAGGG
  TCGGTGAGTG TCACTAGGAC TTGTCACTCG CGCGCTAGCT CGGGGCTCTG AGATTTCCCG
  TCCTTGCCCG GGTCTCCACT CTGCCAGCGG GCAGCGCCCC AACCTGGGGC CTCCGAGCCC
  CTGCCTATCG CCGGGACCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397854046	MGP_WTSI_17_24489133	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224924117					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397854046	MGP_WTSI_17_24489133	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:24571162 () rs orientation: forward

Symbol	Name	Function Class
Abca3	ATP-binding cassette, sub-family A member 3	within coordinates
Abca17	ATP-binding cassette, sub-family A member 17	1120 bp upstream
Cpgi8716	CpG island 8716	within coordinates
Rr405082	regulatory region 405082	170 bp downstream
Rr523280	regulatory region 523280	1170 bp distal
Rr523281	regulatory region 523281	132 bp distal
Rr523282	regulatory region 523282	948 bp distal
Rr523283	regulatory region 523283	263 bp distal
Rr523284	regulatory region 523284	within coordinates
Rr523285	regulatory region 523285	60 bp distal
Rr523286	regulatory region 523286	1341 bp proximal
Tssr143021	transcription start site region 143021	240 bp downstream
Tssr143022	transcription start site region 143022	220 bp downstream
Tssr143023	transcription start site region 143023	160 bp downstream
Tssr143024	transcription start site region 143024	39 bp downstream
Tssr146725	transcription start site region 146725	1124 bp upstream
Tssr146726	transcription start site region 146726	1080 bp upstream