rs224935856 SNP Detail

Summary

• ID
  rs224935856
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:76375139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGAATCGGC GGGGTCCGCG
  GCTCGGGGAG GGAGGCGGGG CTACCGCGCG CGGCGGTGGA GGAGCAGCTC GCCAAGCCTG
  CAGCTCGCGA GCGCCGAGCG AGCCTCCCGG AGGTAGGTGC GCGGCGGCCA GGGCGGTGGC
  GCGGGGTGCG GGCGGTGCCG GGGCGCGGGG CCGCGGCGAG CGGAGCGGGC GGCGCCCTCC
  Y
  CGGCCGGCCG CGGCGAGCGC GGGCCTGGGG GCGGGGCGGG GGCCCGCGGC GCAGTTCCGC
  CTGCGCGCGC CCACTCCTCC GGCAGCGCGG AGCCCGTCGG AAGAGGAAGG AACAAAAGGT
  CCGGGGCCCG GCTCGGACGG GCCGGGACCA GGCGCTGGGT GCAGGTAAAG CCGGGGCGCC
  CGGGGAACCG GGCAGGAGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ
ss401278432	MGP_WTSI_18_76401722	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LP/J	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	WSB/EiJ
rs224935856					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401278432	MGP_WTSI_18_76401722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:76375139 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10251	CpG island 10251	within coordinates
Rr540992	regulatory region 540992	357 bp distal
Rr540993	regulatory region 540993	within coordinates
Smad2	SMAD family member 2	within coordinates
Tssr151989	transcription start site region 151989	754 bp downstream
Tssr151990	transcription start site region 151990	706 bp downstream
Tssr151991	transcription start site region 151991	604 bp downstream
Tssr151992	transcription start site region 151992	327 bp downstream
Tssr151993	transcription start site region 151993	109 bp downstream
Tssr151994	transcription start site region 151994	67 bp upstream