rs224940809 SNP Detail

Summary

• ID
  rs224940809
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:75367617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAACACTTG AAAGCCTGAG
  ACAGGAGGGT CAGCCTGGGC TACACGGGGA AGGGTGGTTT CTTTTAAAAA TTTAGATTAA
  TAATTAATAT AGATAAAACA TATTCTATTA TTAATCTAGA CCTTGCTAAC ATTTCCCGTG
  TGAGTATGAA ATTCAACCAG CCAACGCTAT TTTCAGTCAG TAAATGGTGA CCTCTCTCCC
  Y
  GCAATATAGG CATTGGCATT TCATTCACTA CCTCCCAAAT ATTATCAGTA TAGACTTAGA
  AGGGATTTTG GAAAAAAAAA AAAAAAAGAA GGTAAAGGCC TCTGAAATCC CACAGTATCT
  AACCATACAC AAACGGTTTT CTTGTATGGC GATGGCTTGT TTTAACTCTC AGCTGACTTA
  ATTTGTCCAT AATTATGCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391575924	MGP_WTSI_14_75529984	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224940809					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391575924	MGP_WTSI_14_75529984	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:75367617 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6736	CpG island 6736	344 bp proximal
Cpgi6737	CpG island 6737	917 bp proximal
Gm62951	predicted gene, 62951	193 bp downstream
Lcp1	lymphocyte cytosolic protein 1	953 bp upstream
Lrrc63	leucine rich repeat containing 63	within coordinates
Rr297500	regulatory region 297500	within coordinates
Tssr4477	transcription start site region 4477	450 bp downstream
Tssr126606	transcription start site region 126606	930 bp upstream
Tssr126607	transcription start site region 126607	1049 bp upstream
Tssr126608	transcription start site region 126608	1096 bp upstream
Tssr126609	transcription start site region 126609	1355 bp upstream
Tssr126610	transcription start site region 126610	1407 bp upstream
Tssr126611	transcription start site region 126611	1844 bp upstream
Tssr126612	transcription start site region 126612	1869 bp upstream
Tssr129761	transcription start site region 129761	409 bp downstream
Tssr129762	transcription start site region 129762	431 bp downstream
Tssr129763	transcription start site region 129763	467 bp downstream
Tssr129764	transcription start site region 129764	731 bp downstream
Tssr129765	transcription start site region 129765	828 bp downstream
Tssr129766	transcription start site region 129766	1398 bp downstream
Tssr129767	transcription start site region 129767	1440 bp downstream