rs224947203 SNP Detail

Summary

• ID
  rs224947203
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:30065230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTTGGCT ATGACAGAGA CCCAACgtgt
  gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgATAAACA AATGGTGTCC
  TCCTCCCTCT AGACGCCCAT TTGCAAATTG CTGTCTGCCC ATCCCACGCC CCCAAATCCT
  R
  TCCCCCCGCC CATCACCCAC CCCACCAATT TCTCCAGCTT CCCCACAGTT CCCGATGCTC
  CCACCTGTCT CTGAGGAAAT GTTGACCTCT ATGCTGAGGT CAGGCACTGG TGACCCTGGG
  AAGGAAGCCA TGCACAGATA AGTGCCGTAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325355129	CHEV_17_29983201	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224947203					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:30065230 () rs orientation: forward

Symbol	Name	Function Class
Gm56908	predicted gene, 56908	287 bp upstream
Mdga1	MAM domain containing glycosylphosphatidylinositol anchor 1	within coordinates
Rr330462	regulatory region 330462	171 bp proximal
Rr341132	regulatory region 341132	within coordinates
Rr392501	regulatory region 392501	552 bp upstream
Tssr143596	transcription start site region 143596	274 bp upstream
Tssr143597	transcription start site region 143597	291 bp upstream
Tssr143598	transcription start site region 143598	1964 bp upstream