rs224962338 SNP Detail

Summary

• ID
  rs224962338
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:43444684 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGGTGACA TGCTGTGGGC
  TTAGACAAGG CACAGGAGCA AACACGCAGC AACCGAGGCA GTCTCTTCTG TTGTCATTAT
  TCTGAAAATC TTGGGTCTTA GTTTTTATGC CTAATAGGTA TTCCTCAAAG GATCCAAGCT
  CAGATTAGGA CAGGAGAGGC AGCTCAAGGA TCAGCATTTA AAGAAATAAT TAACCTTAAT
  R
  ATATTTTCCA GGCTTCCTTT CATTTGGATT TCCAAGTTCT AACTCTTTCT GTGGTTAATC
  ATACTATCAA GATTTATGAC CTCAAAAATT TTAAAGTCCA TTTATTAGGC AGTAAAATAT
  TTCGAGGAAT TAGTGGACTA TATTAATTTT TCTTTTGCAG CAAAGTCCTC TGCCTTTAGG
  ACTGAGCACT TGAGTCAGTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320267200	CHEV_2_43410192	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224962338					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:43444684 () rs orientation: forward

Symbol	Name	Function Class
Kynu	kynureninase	657 bp upstream
Rr396942	regulatory region 396942	1791 bp upstream
Rr556278	regulatory region 556278	within coordinates
Rr556279	regulatory region 556279	365 bp proximal
Rr556280	regulatory region 556280	693 bp proximal
Tssr17589	transcription start site region 17589	649 bp upstream
Tssr17590	transcription start site region 17590	673 bp upstream
Tssr17591	transcription start site region 17591	690 bp upstream