rs224962692 SNP Detail

Summary

• ID
  rs224962692
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101900377 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAATCCAC AGTCTTGATT
  CTTTTAACAA CTTTCTGGGT GCTCTACCAC GTGCAGAGCT CCGCAAGGTA CAGTGAAAAC
  AACACAAGAT AAACACCCCG TCTTACAGAG GACCTCCAAA TAAAGTGGAT CAGGTCTGAC
  AGGTAGTTTA ATGTTTCCAA GTATCAGTTT TTTGTTTTGT TTTGTTTTGG TAAAATCAAC
  M
  AAAAAAATTT CTCCACCCAG AGGATGTGAA GATTACAGAA TAGGTATCCG TGCTGTGGTA
  CTGTATAGAA AGTCAAGTTA GGACAATCAA ACTCAGGCTG GTCAGTGACT GACTAAACGA
  GTGTTCTCAG ATTCCAGAAG CCTGTTCTCA TCGCACAGGC AGTTTGTGGA CCCCTTACTT
  CTTCTTTGGC CCTTAGGCAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353667	CHEV_7_109399684	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs224962692					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101900377 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	186 bp distal
Rhog	ras homolog family member G	1052 bp upstream
Rr652562	regulatory region 652562	1093 bp distal
Rr652563	regulatory region 652563	557 bp distal
Rr652564	regulatory region 652564	228 bp distal
Tssr2354	transcription start site region 2354	894 bp downstream
Tssr68328	transcription start site region 68328	1477 bp downstream
Tssr68329	transcription start site region 68329	1456 bp downstream
Tssr68330	transcription start site region 68330	915 bp downstream
Tssr73939	transcription start site region 73939	1796 bp upstream
Tssr73940	transcription start site region 73940	1749 bp upstream
Tssr73941	transcription start site region 73941	1696 bp upstream
Tssr73942	transcription start site region 73942	1611 bp upstream
Tssr73943	transcription start site region 73943	1084 bp upstream
Tssr73944	transcription start site region 73944	1047 bp upstream
Tssr73945	transcription start site region 73945	1032 bp upstream
Tssr73946	transcription start site region 73946	836 bp upstream
Tssr73947	transcription start site region 73947	691 bp upstream
Tssr73948	transcription start site region 73948	655 bp upstream
Tssr73949	transcription start site region 73949	622 bp upstream
Tssr73950	transcription start site region 73950	575 bp upstream