rs224967441 SNP Detail

Summary

• ID
  rs224967441
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:17849024 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCGTCCA TCCCCCTGGC
  CCACCCAGCC GCAAGGGATG CTGTGAAAAG AGCCGCTGCT TGCCGCCTCC GGCCTGCCGT
  CCAGAGGGCT CCGCCCGTAG AGGTCAACTC CCCTCATTCT TCTTCTTTCC ATCTTGCCCT
  CCCTCCGCCG AGCCCAGACT CGGATCTCCT CCTGACTCCC GCCGCAGTCA GAGAGAGCGC
  R
  TCTGCTGCGC TGCCCTTAAA TCTACGCCCA GAGCGGGCTC AGACCCGATC TCTGCTCTCC
  AGAGCCGGAG GAAGCCCGAG CAAGCAGCCT TTTCTCTTCG CAGTAAAATC ATAGCCAGAC
  CAGATGGGCC CCAGCTCTCC CGGGACTCGG CAGGTGCTGT TGAGTTAATT TTTCCGCAAT
  ACAAAGAAGG AGGACCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357118728	MGP_WTSI_3_17694860	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224967441					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357118728	MGP_WTSI_3_17694860	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:17849024 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12996	CpG island 12996	within coordinates
Gm66000	predicted gene, 66000	642 bp upstream
Mir124-2hg	Mir124-2 host gene (non-protein coding)	within coordinates
Mir124a-2	microRNA 124a-2	802 bp upstream
Mir124b	microRNA 124b	825 bp downstream
Rr573850	regulatory region 573850	1751 bp distal
Rr573851	regulatory region 573851	930 bp distal
Tssr28485	transcription start site region 28485	934 bp downstream
Tssr28486	transcription start site region 28486	868 bp downstream
Tssr28487	transcription start site region 28487	818 bp downstream
Tssr28488	transcription start site region 28488	521 bp downstream
Tssr28489	transcription start site region 28489	883 bp upstream