rs224969378 SNP Detail

Summary

• ID
  rs224969378
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29896305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAACAACG ATTTAAAAAT
  ACTTAAGGGA GCCTATCGTG GTGGCACTTG TCTTTGATCC CAGCACTCAG GGGGCAGAGG
  CAGGGAGAAC TCTGAGGCCA GCCTGGTCTA CACAGTGAGT TCCAGAGGAC AGACTGGGCT
  ACATGGTGAG ACCCTGTCTC AAACAAACAA AAGAAGGTTC ATGGGAGTTT TGCTTGGGGA
  Y
  GGCTCAGGGG TCAAGAGTCT TGACTGTTCC TCCAGAGGAC CCGGGTTCAG TGCTGAGCAC
  CCACATCAAG CAGCTCCCAA GTGTCTCAAG TCCAGATCTA GGCTCCCTCT TCTGGCTCTG
  AAGGCGCTGG CACAAATGTA CAAAGTCATG CATGCAAGCA AAACACACGT ACAAACAAAA
  ATAAAATAAA ACCCATTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370901061	MGP_WTSI_7_30981899	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224969378					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	C	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370901061	MGP_WTSI_7_30981899	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29896305 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18783	CpG island 18783	1564 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	within coordinates
Rr400233	regulatory region 400233	1544 bp downstream
Rr644739	regulatory region 644739	1342 bp distal
Rr644740	regulatory region 644740	182 bp distal
Rr644741	regulatory region 644741	818 bp proximal
Rr644742	regulatory region 644742	1321 bp proximal
Rr644743	regulatory region 644743	1761 bp proximal
Rr644744	regulatory region 644744	1921 bp proximal
Rr644745	regulatory region 644745	2000 bp proximal
Tssr71706	transcription start site region 71706	1849 bp upstream
Tssr71707	transcription start site region 71707	1837 bp upstream
Tssr71708	transcription start site region 71708	1790 bp upstream
Tssr71709	transcription start site region 71709	1655 bp upstream
Tssr71710	transcription start site region 71710	1311 bp upstream
Tssr71711	transcription start site region 71711	1939 bp downstream
Tssr71712	transcription start site region 71712	1971 bp downstream