rs224972329 SNP Detail

Summary

• ID
  rs224972329
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:78230837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGATCCT TCGCTTTGGC
  TGTGTCTCTG TATACAGGTA AGTGCACTCT GTGCGCAGAG GAAAGTGGAA ACTGGGCTCC
  GGGGTCACAG AGATGACACA GCTGGATACA CTCTCGTTCC CAGCCTACCA TTCACTCCCC
  TGGTTTCAGT TTTCTCTCTA TACGTGGGCA CAGAAGTAGC TGGCACAGAG GTCTATGGAA
  Y
  CTCACATACA CGTGTCCCCA CCCTCCTGCT GTCTTCCAGG ACGTACAGGA AGTGGAAGGA
  AAAGATCCCC AACCCCAGCA AGAGCCTCCT GTTCCAGGTA GGAAGGCAGG CCCTGCTGCT
  GGCTCCCTGT CCCATTCCTG TGTCCGTGGG AAAGCGAGGG GAAGCTGGAA GGCTAGGCAG
  CAGGAGGTGG GTATCTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394652010	MGP_WTSI_15_78177067	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LEWES/EiJ	LG/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224972329					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394652010	MGP_WTSI_15_78177067	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78230837 () rs orientation: forward

Symbol	Name	Function Class
Csf2rb	colony stimulating factor 2 receptor, beta, low-affinity (granulocyte-macrophage)	within coordinates
Mir7676-2	microRNA 7676-2	1962 bp upstream
Rr505249	regulatory region 505249	1751 bp proximal
Tssr131930	transcription start site region 131930	1726 bp downstream
Tssr131931	transcription start site region 131931	1142 bp downstream
Tssr131932	transcription start site region 131932	1430 bp upstream
Tssr131933	transcription start site region 131933	1514 bp upstream
Tssr131934	transcription start site region 131934	1578 bp upstream
Tssr131935	transcription start site region 131935	1643 bp upstream