rs224984712 SNP Detail

Summary

• ID
  rs224984712
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:87192349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATACTGCC TTTGAGACTT
  AACCAAATCA ATGCAGTGGT GGTCTACATC ACAGTGAGTG ATGGTCCACA TAAAACTGAA
  CTGAATGACC TGCATCTCTT CAGGTAATGT GTTAGTATTT AAGGAATAGA CATGGGATGT
  GCATTTTAAT TACCGCCAAT GATACCAAAG ATCAGAATCA ATCGAAACTG CTTTGCACAG
  R
  TCATAACTGG TAGACTGTTC TTAGACTATA TTCATACTGC TGGCCCCTCA TCAGGACTTA
  TTTGTAAGAG GCTGAGTCCA GGGCCCATCA CCCCCCTGCT TGGAGTTTCA TTGACAGCAG
  CCGTAATTAA ATCATATGAG ACAAACTGAA CAGATGTGGT TTCTGCCTCT GTCAGCCATG
  CTGATCTGAG TAGCTAATAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss386776084	MGP_WTSI_12_88486525	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224984712					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss386776084	MGP_WTSI_12_88486525	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:87192349 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4937	CpG island 4937	1392 bp proximal
Gstz1	glutathione transferase zeta 1 (maleylacetoacetate isomerase)	1590 bp upstream
Pomt2	protein-O-mannosyltransferase 2	within coordinates
Rr403429	regulatory region 403429	1405 bp upstream
Rr403430	regulatory region 403430	1948 bp upstream
Rr470321	regulatory region 470321	1100 bp proximal
Rr470322	regulatory region 470322	1528 bp proximal
Rr470323	regulatory region 470323	1653 bp proximal
Rr470324	regulatory region 470324	1910 bp proximal
Tssr114506	transcription start site region 114506	1574 bp upstream
Tssr117156	transcription start site region 117156	1843 bp downstream
Tssr117157	transcription start site region 117157	1909 bp downstream