rs224990570 SNP Detail

Summary

• ID
  rs224990570
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119573793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGCTGGCG TACCTGGGTA
  ACTGTCAGGT AGGGCTGGAG AGATCAGAGC GGGGTAGCCT TGCCCCGGGA GCCCTGAGAG
  AAAAAGGGGC GCGTGAGCTT TTCCCTCTCC TCCCCCTCTC GGTGCCGCGG CCCCACCCCC
  GCCGTTGCCA CGGTTTCCCT CTCTTGAGTG GGAGTGGAGC GGAGCTCCTG GCTCTGCTCC
  S
  GAGCCGCTGC CGTCTGCTCC CCGCGCGCGC ACGAGGCGTG GATGCGGGAA GGGAGGGGCG
  CAGGGCTAGA ACCGAGCGGA ACCAAGATCC ACCTGCTGCG TCCCCCCTCC TCGCCCTGGC
  CTACTGCTCC TAAGTGTCCT GGGAAAGGTA AACTGAGGCT GACAAGAGCT TGCTAGTCTC
  TGTATGGCAA TGTGAATGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355435778	MGP_WTSI_2_119569048	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224990570					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355435778	MGP_WTSI_2_119569048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119573793 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12126	CpG island 12126	within coordinates
Gm75736	predicted gene, 75736	117 bp upstream
Itpka	inositol 1,4,5-trisphosphate 3-kinase A	Intron
Rr563568	regulatory region 563568	965 bp distal
Rr563569	regulatory region 563569	1243 bp distal
Rr563570	regulatory region 563570	1201 bp distal
Rr563571	regulatory region 563571	within coordinates
Rr563572	regulatory region 563572	74 bp distal
Rr563573	regulatory region 563573	1206 bp proximal
Rr563574	regulatory region 563574	1374 bp proximal
Rr563575	regulatory region 563575	1749 bp proximal
Tssr19656	transcription start site region 19656	1007 bp downstream
Tssr19657	transcription start site region 19657	981 bp downstream
Tssr19658	transcription start site region 19658	957 bp downstream
Tssr25827	transcription start site region 25827	107 bp upstream