rs224996421 SNP Detail

Summary

• ID
  rs224996421
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:129856234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCATATGCT GAAGCTACAC
  AAGTATGGTG CAGTCTCCTG CTGCTGCCTG CAGATCAAGA TGTAGAATCT CCGCTCCTCC
  AGCACCATAA TCTGCTTGCA GGCTGCTATC CTTCCCACCC TGATGATAAT GGACTAAACC
  TCAGAAACTG GAAGCCAGCC CCAAATTAAA TATTTCTCTT TATAAGAGTT GCTGTGGTCA
  W
  GGTGTCTCTT CACAGAAATG AAACCCTAAG ACACCCTCCA TCAAAAGGAG TTGTTTCTCA
  TACCTCTAGC AGGAGCGACT ATATATATAT AACTACCTGT GGTGTCCATT AGCATATCAA
  AATCCATGCT GCCCTCCATC GTTCCTCTGT ACCACGAATA CCTGTTATAC ATCTCAAAGT
  CCATCCTAGC CCGTCTCACC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359703500	MGP_WTSI_3_129765503	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	A	A	T	T	T	T	T	T	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs224996421					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	T	T	T	A	T	T	T	A	A	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359703500	MGP_WTSI_3_129765503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:129856234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13821	CpG island 13821	1200 bp distal
Sec24b	SEC24 homolog B, COPII coat complex component	1032 bp upstream
Tssr31665	transcription start site region 31665	1794 bp downstream
Tssr35653	transcription start site region 35653	1852 bp upstream
Tssr35654	transcription start site region 35654	1827 bp upstream
Tssr35655	transcription start site region 35655	1759 bp upstream
Tssr35656	transcription start site region 35656	1736 bp upstream
Tssr35657	transcription start site region 35657	1720 bp upstream
Tssr35658	transcription start site region 35658	1555 bp upstream
Tssr35659	transcription start site region 35659	1077 bp upstream
Tssr35660	transcription start site region 35660	1000 bp upstream