rs225005459 SNP Detail

Summary

• ID
  rs225005459
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108534001 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

             TCGATCGTGG ACAGCTACGA ACGCCGCAAC GAGGGAGCTG CCCGAGTTAT
  Y
  GGAACCCTGT TGGGTGAGTT CTGGGGAAAT TAATGTTTTC TTCCTGTGCA           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388638	CHEV_7_116078308	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225005459					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108534001 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	within coordinates
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	1860 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	within coordinates
Rr400539	regulatory region 400539	336 bp downstream
Rr652952	regulatory region 652952	367 bp distal
Rr652953	regulatory region 652953	624 bp distal
Tssr68456	transcription start site region 68456	364 bp downstream
Tssr68457	transcription start site region 68457	266 bp downstream