rs225013403 SNP Detail

Summary

• ID
  rs225013403
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177274161 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGACCCC CCCCCCATTC
  ATTTTTAAAA TGTTTGGATT TGTTCATAGT AAAGATGATC TTTCCCATCT GTCGGTACAG
  TTCTGCTCCT CTGTGTGTGT AGTACCTGCA GATCTTACCG CACCAACATC TGTTCTTATA
  CACAGGGCTT TTGTTGTTGT AACACTCTGA CTTTAAAAGT AAGTTGTTTG CTGATTTCTG
  S
  ACTAATTATG CAATTTCATT TTTTTTCCCC TTCATTTCAG CCAAATGTGT GTGTTCAGTC
  TGTGCTTTCT AAGTAGTTGG GTATCAGACG TGTTACAAAG AATGGCTGGA CATGTCTTCT
  TGACTCTTCC AGAATTTGTG TGGGACTTTG CCTGATATTA TGAGTTCTTT CCCTTTGAAG
  TTAAAGCTCT CTTTTAGGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352522297	MGP_WTSI_1_179376726	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225013403					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352522297	MGP_WTSI_1_179376726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177274161 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1082	CpG island 1082	1475 bp proximal
Rr29056	regulatory region 29056	within coordinates
Tssr312	transcription start site region 312	564 bp upstream
Tssr313	transcription start site region 313	1255 bp upstream
Tssr10348	transcription start site region 10348	1950 bp downstream
Tssr10349	transcription start site region 10349	1926 bp downstream
Tssr10350	transcription start site region 10350	1895 bp downstream
Tssr10351	transcription start site region 10351	1853 bp downstream
Tssr10352	transcription start site region 10352	923 bp downstream
Tssr10353	transcription start site region 10353	520 bp upstream
Tssr10354	transcription start site region 10354	552 bp upstream
Tssr10355	transcription start site region 10355	594 bp upstream
Tssr10356	transcription start site region 10356	682 bp upstream
Tssr10357	transcription start site region 10357	758 bp upstream
Tssr10358	transcription start site region 10358	852 bp upstream
Tssr10359	transcription start site region 10359	869 bp upstream
Tssr10360	transcription start site region 10360	1604 bp upstream
Tssr10361	transcription start site region 10361	1648 bp upstream
Zbtb18	zinc finger and BTB domain containing 18	within coordinates