GGAGC CCGCGGGCGG GAACCTGCCT Y TGCGCGCTAC AGCGCACGCG CGCCT Y = C/T Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | LG/J |
SM/J |
---|---|---|---|---|---|---|---|
ss323549889 | CHEV_11_6315688 | CHEVERUD | SCREENING_POP | f | SNP | T | C |
SNP Consensus Information | |||||||
SNP | Consensus Type | LG/J |
SM/J |
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rs225023367 | SNP | T | C |
Location: Chr11:6365685 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi2558 | CpG island 2558 | within coordinates | ||||||
Gm71788 | predicted gene, 71788 | within coordinates | ||||||
Ppia | peptidylprolyl isomerase A | 182 bp upstream | ||||||
Rr246944 | regulatory region 246944 | within coordinates | ||||||
Rr402411 | regulatory region 402411 | 92 bp upstream | ||||||
Tssr100250 | transcription start site region 100250 | 89 bp upstream | ||||||
Tssr100251 | transcription start site region 100251 | 118 bp upstream | ||||||
Tssr100252 | transcription start site region 100252 | 145 bp upstream | ||||||
Tssr100253 | transcription start site region 100253 | 542 bp upstream | ||||||
Tssr100254 | transcription start site region 100254 | 573 bp upstream | ||||||
Tssr100255 | transcription start site region 100255 | 644 bp upstream | ||||||
Tssr106715 | transcription start site region 106715 | within coordinates |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/10/2024 MGI 6.24 |
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