rs225025315 SNP Detail

Summary

• ID
  rs225025315
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:77828932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGTGCTG TGCTTAGGAA
  ATAGGGAAAT AGGAGTCTTG TCGGCATATA GGATGGCTTG GCTAGGATGG AGGCTCGGAT
  TGTGGAGAGA GCCTGAGATT ATGGAGCGGT AACAGTCTGG CTTACCTCCC ACAATAAATG
  CATGTGACAG ACTGAAAAAG CACAGGCTCG GGATTCGCGG TTCGAGTAAA GCACACGTGT
  R
  CTAGCTAGTG TTGACGTTTG GAAAGGCATG GGCATTGGTG GGTAAAACTG GCTGCGTTGT
  CCCTTATCTT CACCTGCTAT CAACATGAGA AATTAGTTTT GAGCCCTGGT GTCTGTCTGT
  CTGTTTGTCT CTCTCTCTAC CCCTTCCTCC CCCATTAAAG ATGAAAGGTT AACATTTCTT
  AGTTTCAGTT TTGCCAAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378145985	MGP_WTSI_9_77769457	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A	A	G	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225025315					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	G	G	A	A	G	A	A	A	G	G	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378145985	MGP_WTSI_9_77769457	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:77828932 () rs orientation: forward

Symbol	Name	Function Class
Elovl5	ELOVL fatty acid elongase 5	within coordinates
Rr683431	regulatory region 683431	within coordinates
Tssr86219	transcription start site region 86219	1463 bp downstream
Tssr86220	transcription start site region 86220	1247 bp downstream
Tssr86221	transcription start site region 86221	169 bp downstream
Tssr86222	transcription start site region 86222	150 bp downstream
Tssr86223	transcription start site region 86223	123 bp downstream
Tssr86224	transcription start site region 86224	71 bp upstream
Tssr86225	transcription start site region 86225	258 bp upstream
Tssr86226	transcription start site region 86226	1618 bp upstream
Tssr86227	transcription start site region 86227	1667 bp upstream