rs225027713 SNP Detail

Summary

• ID
  rs225027713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152461133 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTCCAAAA CGCTAGGATC
  TCTTGCCACA CTGGACTGCA CCTTCACCAA TAGCTTCCTG GACTCTCCTT GGGGAGTCCA
  GCCCTGTCAC TTAGTGCCAA GCCTCAGCCG CAACCCATGA CCCCTTCATG CCTTCGAAGC
  CAATACTTTG AAACCTAGGT GACTCCTATA CTACCAAGTT CAGCTGCCGC AGAGGCACAG
  Y
  GTGGGTGGCC TCTGGACCAC AGCTTGTGCA CTAACCCTCA GGAAACACTT CCCAGAAGAT
  TTCACCTTAA GGATGCGTAA CCACAGCTCG ATGGCTGCCG ATTCTTCCGC CCCCGCTGAC
  CAGCATCCAT TGTCCTAGCA AAGTAAAAGT TTGGCTTTAG TGATTTTGTT TCTTGTTCAT
  CACAGCTGAT TTTTCAGCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320562568	CHEV_2_152444949	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225027713					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152461133 () rs orientation: forward

Symbol	Name	Function Class
Rr567403	regulatory region 567403	1638 bp distal
Rr567404	regulatory region 567404	1526 bp proximal