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rs225034480 SNP Detail
Summary
  • ID
    rs225034480
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:156352018 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAGCAGGGCC AGAGTTTACA
    CAGATGTTAA CACACACAGA CCCCGAGAGT ACTGGGATTA TGAATCACAT GTGGTGGAAT
    GGGGGAATCA AGATGACTAC CAGCTTGTTC GAAAATTAGG TAGGGGCAAA TACAGTGAAG
    TGTTTGAAGC CATCAACATC ACAAATAATG AAAAAGTTGT TGTTAAAATT CTCAAGCCAG
    W
    AAAAAAGAAG AAAATTAAGC GTGAAATAAA GATTTTGGAG AATTTGAGAG GTGGGCCCAA
    CATCATCACA CTTGCAGACA TTGTAAAAGA CCCTGTGTCA CGAACCCCTG CCTTGGTTTT
    TGAACATGTA AACAACACAG ACTTCAAGCA ATTGTACCAG ACGTTAACAG ACTATGACAT
    TCGATTTTAC ATGTATGAAA                                            
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CZECHII/EiJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
PWK/PhJ
SJL/J
SM/J
WSB/EiJ
ZALENDE/EiJ
ss352039842 MGP_WTSI_1_158454579 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T A T T T T T T T T
SNP Consensus Information
SNP Consensus Type
B10.RIII-H2 H2-T18/(71NS)SnJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
CZECHII/EiJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
PWK/PhJ
SJL/J
SM/J
WSB/EiJ
ZALENDE/EiJ
rs225034480 SNP T T T T T T A T T T T T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss352039842 MGP_WTSI_1_158454579 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:156352018 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Csnk2a1-ps3 casein kinase 2, alpha 1 polypeptide, pseudogene 3 within coordinates
Rr372288 regulatory region 372288 1141 bp downstream
Rr421189 regulatory region 421189 1962 bp distal
Rr421190 regulatory region 421190 311 bp distal
Tssr9569 transcription start site region 9569 341 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory