rs225045598 SNP Detail

Summary

• ID
  rs225045598
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:79492839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCAAAGA AGGCGAAATG
  AACCCTTCTC TCTCTCTCTC TCCCTCTCTC CCTCTCTCTC TCTCTCTCTC TCTCTCTCTC
  TCTCTCTCTC TCGTACCTCT CAGAAGTAAA TGACAGTGTT TCCCATTCAG GTTTACCTGG
  CACATGAGCC GTCCCATGGT GGACACTTAC AGCTAAGCCC TCCTCCCCAC AGCACAGCAC
  Y
  GCCCTCGGCT CTCTGTCCTG GGTAGACATG AACACATTAC TTAACCAGCT CTGTCAAACA
  TGCCCTTTCC CTTCTCCTTC ACCGGCCCCT GCCTCCCAGA CAGCCACCCT GGCTGATGCT
  CATCCCGACG TTGATCCAGC TCACCCCCTT CTCCTCACAG CCTCTAGCAG ACCCTGCTGT
  AGTCTCATGA ATTCCCTGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372032969	MGP_WTSI_7_86987977	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225045598					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372032969	MGP_WTSI_7_86987977	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79492839 () rs orientation: forward

Symbol	Name	Function Class
Anpep	alanyl aminopeptidase, membrane	within coordinates
Gm71751	predicted gene, 71751	within coordinates
Tssr67371	transcription start site region 67371	1252 bp downstream
Tssr67372	transcription start site region 67372	1001 bp downstream
Tssr67373	transcription start site region 67373	582 bp downstream
Tssr67374	transcription start site region 67374	542 bp downstream
Tssr67375	transcription start site region 67375	506 bp downstream
Tssr73164	transcription start site region 73164	1932 bp upstream
Tssr73165	transcription start site region 73165	1386 bp upstream
Tssr73166	transcription start site region 73166	1354 bp upstream
Tssr73167	transcription start site region 73167	1152 bp upstream
Tssr73168	transcription start site region 73168	1131 bp upstream
Tssr73169	transcription start site region 73169	1094 bp upstream
Tssr73170	transcription start site region 73170	1075 bp upstream
Tssr73171	transcription start site region 73171	990 bp upstream
Tssr73172	transcription start site region 73172	978 bp upstream
Tssr73173	transcription start site region 73173	960 bp upstream
Tssr73174	transcription start site region 73174	874 bp upstream
Tssr73175	transcription start site region 73175	846 bp upstream
Tssr73176	transcription start site region 73176	789 bp upstream
Tssr73177	transcription start site region 73177	763 bp upstream
Tssr73178	transcription start site region 73178	737 bp upstream
Tssr73179	transcription start site region 73179	672 bp upstream
Tssr73180	transcription start site region 73180	582 bp upstream
Tssr73181	transcription start site region 73181	516 bp upstream
Tssr73182	transcription start site region 73182	504 bp upstream
Tssr73183	transcription start site region 73183	465 bp upstream
Tssr73184	transcription start site region 73184	184 bp downstream
Tssr73185	transcription start site region 73185	1433 bp downstream