rs225049474 SNP Detail

Summary

• ID
  rs225049474
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:37693555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CGTGACAGA CATATGGCTA AAGCTAAAAC
  TTCCTGATGA GTTATGCTTA TTTTATTTCA TTTAAAATGC ATTGGTGTTT TGGACAAAAT
  TATACAAACA TTACAAAGCA GGAAGAACTT GGGCCCCGTT TTCTCCCCTT CCCCTCCCCC
  T
  GTGTAATTTT AGGGATCGTA TCACAAACCA AATGGAGCAA TCACTAAAAC CCCACAGCAG
  GAAATCCCAC CCTTTAGTGT GTAATTATAT TACATTTGCA AAAATGACTG TTCTTTCTGA
  AACTTTCATA TTTCGCATGA TCTGAACTTT                                 
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320711444	CHEV_3_37538328	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225049474					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37693555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13100	CpG island 13100	275 bp proximal
Gm42922	predicted gene 42922	699 bp downstream
Rr575523	regulatory region 575523	51 bp proximal
Rr575524	regulatory region 575524	685 bp proximal
Rr575525	regulatory region 575525	1370 bp proximal
Rr575526	regulatory region 575526	1478 bp proximal
Spry1	sprouty RTK signaling antagonist 1	541 bp upstream
Tssr28908	transcription start site region 28908	258 bp upstream
Tssr28909	transcription start site region 28909	499 bp upstream
Tssr28910	transcription start site region 28910	522 bp upstream
Tssr28911	transcription start site region 28911	539 bp upstream
Tssr28912	transcription start site region 28912	579 bp upstream