rs225059644 SNP Detail

Summary

• ID
  rs225059644
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36395790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCGGCCGG GGGCGAGCGG
  AGACTTTTGA TCTTACCGGT AGGGTGAGAT CTTGGTCTCC TGGTCTATAA GAAAAAGAAA
  GCACGCTGTG AACTTTTAAA ACAAACTTGA AAAACCAACC ACAAAGAAAG CATGAAAAAG
  AGACAGGGCT GAATAAGAGG GAAGAGAAGA ATAAGTTTAA AATAAGAGGA AGAAGAAGAA
  R
  AAAAGAAGCA AGAAAGGAAG GCCAGGGTTT GCAGCTCCCA GTGCGCTCAG GCAGCTAGTC
  CTGGGGCGCA GGGTGCCGGC CCTCGGGTAG ACTGTGGGCC TCGGGGCTCA CGTGGGTTTC
  AGGGTCCCAG CCGGAGCACC CAGATATAGT GCTGCTCCCG GGAGCTGGGG GCCCAGAGGC
  CACCCCAGCC ACCGCCGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371011572	MGP_WTSI_7_37481384	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225059644					SNP	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	G	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371011572	MGP_WTSI_7_37481384	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36395790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18883	CpG island 18883	1847 bp distal
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	6 bp downstream
Gm72509	predicted gene, 72509	277 bp upstream
Rr645554	regulatory region 645554	454 bp distal
Rr645555	regulatory region 645555	within coordinates
Rr645556	regulatory region 645556	1263 bp proximal
Rr645557	regulatory region 645557	1764 bp proximal
Tshz3	teashirt zinc finger family member 3	1753 bp upstream
Tssr65916	transcription start site region 65916	261 bp upstream
Tssr65917	transcription start site region 65917	1637 bp upstream
Tssr65918	transcription start site region 65918	1847 bp upstream
Tssr72063	transcription start site region 72063	291 bp upstream