rs225072413 SNP Detail

Summary

• ID
  rs225072413
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:130133039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGCTAAG AACATAGCAG
  AACAGGCCAG GTCATGCCCG GGCAGGCCCG TCATTACATG TCCTGACTGG CCTAGTGCCT
  CCCTATCTCC CGCCCTTCTG ACAGTCTGTT GATGTTTAAA TGGACCAATC ATGTAAAACC
  GCGCCAATTC CTCCCCCAGC CCCACCCCTT TTCTATAAAA ACCCCTAGCT TCCAAGCCTC
  R
  CGGACTGTGT GAGATACGTT TCGAACAGGA GCTCCGCCAT TATGGCTCCA CCATGTGGTC
  AACACCTGTC TCCTGTGGGA GATATGTGTC AGCCCGGAGC TCTGTCATTA AACTACCTCA
  TGCTTTTACA TCAAGATGGT CGTCTGTTCG TGATTCTTGG GTGCGCGAAT CGAAAATTGA
  GTGGGGTTTC CCCACTAGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373160649	MGP_WTSI_7_137674823	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225072413					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G	A	G	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373160649	MGP_WTSI_7_137674823	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:130133039 () rs orientation: forward

Symbol	Name	Function Class
Gm4275	predicted gene 4275	1808 bp downstream
Gm57247	predicted gene, 57247	2 bp upstream
Gm72045	predicted gene, 72045	1806 bp downstream
Nsmce4a	NSE4 homolog A, SMC5-SMC6 complex component	1217 bp downstream
Rr153982	regulatory region 153982	1039 bp distal
Rr153983	regulatory region 153983	439 bp distal
Rr153984	regulatory region 153984	within coordinates
Rr153985	regulatory region 153985	1962 bp proximal
Rr169359	regulatory region 169359	562 bp proximal
Rr169360	regulatory region 169360	1896 bp proximal
Rr381489	regulatory region 381489	within coordinates
Tssr69470	transcription start site region 69470	within coordinates