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rs225072430 SNP Detail
Summary
  • ID
    rs225072430
  • Variation Type
    SNP
  • Alleles
    C/G
Genome Location and Flanking Sequence
  • Location
    Chr7:44129713 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCTTGCTATT CTTCCTTTCC
TTCCTCTGCC TCTTCAGTTT CCTCTTTTTA TTCCTTGACA CCTTGCCATA TTCTAAAATC
CTCATCCTCT TTCTTTGTTG TCTTCTTCTT GAGATCTCTT TCACCCTTCC TTCTCCTACT
TCTCTGGTGT CTTACTCCCC CCCCCCCACA CACACACCTT CTCCTTATCT CACCCTCTCC
S
TGCATCTCCT CTTTCTCCAA CTTCCTGTCC TGTCTGCCTC TCTTCTTCAT CCTACTCACC
CTCCTCCACT TCCAACTGTT TTCTCTTCAG CCCATCTCCT TTCTAGCTCC TTCTCTATTC
CTCATCTTCC TTTCTCTGTA CCCTCTTCCC CCACTTCCTC ATCCTCTCCT CTCTTCCTTC
TTGCCCTCAT CTTTTCCTGC                                            

S = C/G

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156134 MGP_WTSI_7_51735659 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs225072430 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156134 MGP_WTSI_7_51735659 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44129713 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2227 transcription start site region 2227 1269 bp downstream
Tssr2228 transcription start site region 2228 206 bp downstream
Tssr2229 transcription start site region 2229 65 bp upstream
Tssr2230 transcription start site region 2230 244 bp upstream
Tssr2231 transcription start site region 2231 377 bp upstream
Tssr2232 transcription start site region 2232 552 bp upstream
Tssr2233 transcription start site region 2233 585 bp upstream
Tssr2234 transcription start site region 2234 744 bp upstream
Tssr2235 transcription start site region 2235 1378 bp upstream
Tssr66271 transcription start site region 66271 1986 bp downstream
Tssr66272 transcription start site region 66272 1934 bp downstream
Tssr66273 transcription start site region 66273 1916 bp downstream
Tssr66274 transcription start site region 66274 1911 bp downstream
Tssr66275 transcription start site region 66275 1891 bp downstream
Tssr66276 transcription start site region 66276 1871 bp downstream
Tssr66277 transcription start site region 66277 1851 bp downstream
Tssr66278 transcription start site region 66278 1807 bp downstream
Tssr66279 transcription start site region 66279 1762 bp downstream
Tssr66280 transcription start site region 66280 1740 bp downstream
Tssr66281 transcription start site region 66281 1700 bp downstream
Tssr66282 transcription start site region 66282 1683 bp downstream
Tssr66283 transcription start site region 66283 1669 bp downstream
Tssr66284 transcription start site region 66284 1657 bp downstream
Tssr66285 transcription start site region 66285 1643 bp downstream
Tssr66286 transcription start site region 66286 1604 bp downstream
Tssr66287 transcription start site region 66287 1568 bp downstream
Tssr66288 transcription start site region 66288 1543 bp downstream
Tssr66289 transcription start site region 66289 1461 bp downstream
Tssr66290 transcription start site region 66290 1423 bp downstream
Tssr66291 transcription start site region 66291 1397 bp downstream
Tssr66292 transcription start site region 66292 1365 bp downstream
Tssr66293 transcription start site region 66293 1343 bp downstream
Tssr66294 transcription start site region 66294 1319 bp downstream
Tssr66295 transcription start site region 66295 1054 bp downstream
Tssr66296 transcription start site region 66296 883 bp downstream
Tssr66297 transcription start site region 66297 859 bp downstream
Tssr66298 transcription start site region 66298 804 bp downstream
Tssr66299 transcription start site region 66299 784 bp downstream
Tssr66300 transcription start site region 66300 761 bp downstream
Tssr66301 transcription start site region 66301 745 bp downstream
Tssr66302 transcription start site region 66302 704 bp downstream
Tssr66303 transcription start site region 66303 695 bp downstream
Tssr66304 transcription start site region 66304 690 bp downstream
Tssr66305 transcription start site region 66305 651 bp downstream
Tssr66306 transcription start site region 66306 597 bp downstream
Tssr66307 transcription start site region 66307 548 bp downstream
Tssr66308 transcription start site region 66308 531 bp downstream
Tssr66309 transcription start site region 66309 481 bp downstream
Tssr66310 transcription start site region 66310 412 bp downstream
Tssr66311 transcription start site region 66311 389 bp downstream
Tssr66312 transcription start site region 66312 370 bp downstream
Tssr66313 transcription start site region 66313 360 bp downstream
Tssr66314 transcription start site region 66314 342 bp downstream
Tssr66315 transcription start site region 66315 335 bp downstream
Tssr66316 transcription start site region 66316 270 bp downstream
Tssr66317 transcription start site region 66317 254 bp downstream
Tssr66318 transcription start site region 66318 213 bp downstream
Tssr66319 transcription start site region 66319 185 bp downstream
Tssr66320 transcription start site region 66320 161 bp downstream
Tssr66321 transcription start site region 66321 137 bp downstream
Tssr66322 transcription start site region 66322 121 bp downstream
Tssr66323 transcription start site region 66323 83 bp downstream
Tssr66324 transcription start site region 66324 30 bp downstream
Tssr66325 transcription start site region 66325 within coordinates
Tssr66326 transcription start site region 66326 12 bp upstream
Tssr66327 transcription start site region 66327 26 bp upstream
Tssr66328 transcription start site region 66328 42 bp upstream
Tssr66329 transcription start site region 66329 81 bp upstream
Tssr66330 transcription start site region 66330 100 bp upstream
Tssr66331 transcription start site region 66331 114 bp upstream
Tssr66332 transcription start site region 66332 135 bp upstream
Tssr66333 transcription start site region 66333 183 bp upstream
Tssr66334 transcription start site region 66334 195 bp upstream
Tssr66335 transcription start site region 66335 204 bp upstream
Tssr66336 transcription start site region 66336 213 bp upstream
Tssr66337 transcription start site region 66337 231 bp upstream
Tssr66338 transcription start site region 66338 287 bp upstream
Tssr66339 transcription start site region 66339 338 bp upstream
Tssr66340 transcription start site region 66340 383 bp upstream
Tssr66341 transcription start site region 66341 428 bp upstream
Tssr66342 transcription start site region 66342 490 bp upstream
Tssr66343 transcription start site region 66343 522 bp upstream
Tssr66344 transcription start site region 66344 667 bp upstream
Tssr66345 transcription start site region 66345 700 bp upstream
Tssr66346 transcription start site region 66346 756 bp upstream
Tssr66347 transcription start site region 66347 794 bp upstream
Tssr66348 transcription start site region 66348 835 bp upstream
Tssr66349 transcription start site region 66349 859 bp upstream
Tssr66350 transcription start site region 66350 887 bp upstream
Tssr66351 transcription start site region 66351 895 bp upstream
Tssr66352 transcription start site region 66352 931 bp upstream
Tssr66353 transcription start site region 66353 1005 bp upstream
Tssr66354 transcription start site region 66354 1019 bp upstream
Tssr66355 transcription start site region 66355 1046 bp upstream
Tssr66356 transcription start site region 66356 1063 bp upstream
Tssr66357 transcription start site region 66357 1077 bp upstream
Tssr66358 transcription start site region 66358 1089 bp upstream
Tssr66359 transcription start site region 66359 1115 bp upstream
Tssr66360 transcription start site region 66360 1127 bp upstream
Tssr66361 transcription start site region 66361 1153 bp upstream
Tssr66362 transcription start site region 66362 1185 bp upstream
Tssr66363 transcription start site region 66363 1202 bp upstream
Tssr66364 transcription start site region 66364 1235 bp upstream
Tssr66365 transcription start site region 66365 1255 bp upstream
Tssr66366 transcription start site region 66366 1275 bp upstream
Tssr66367 transcription start site region 66367 1303 bp upstream
Tssr66368 transcription start site region 66368 1325 bp upstream
Tssr66369 transcription start site region 66369 1359 bp upstream
Tssr66370 transcription start site region 66370 1401 bp upstream
Tssr66371 transcription start site region 66371 1826 bp upstream
Tssr66372 transcription start site region 66372 1989 bp upstream
Tssr72200 transcription start site region 72200 1848 bp upstream
Tssr72201 transcription start site region 72201 1338 bp upstream
Tssr72202 transcription start site region 72202 481 bp upstream
Tssr72203 transcription start site region 72203 101 bp upstream
Tssr72204 transcription start site region 72204 486 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory