About   Help   FAQ
rs225077404 SNP Detail
Summary
  • ID
    rs225077404
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr1:152665936 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                      atgtcctgg aactcacttt gtagaccagg
    ctggcctcga actcagaaat ccacctgcct ctgcctccgg agtgctggga ttaaaggcgt
    gcgccatcac tcccggcttt acatggcttc tgaggacttg aactcatgtc ctcttccttg
    W
    gtggaaaaca ctttaaacac taagtgatct tgctagctcA GTGCTTATTG TTTTGTTCTG
    TTTTTTTTTT CCTCCAattg tatgtgcatg aacgtttcgt tttgcccgtc attgtgtagc
    tatacatatt ccgtacatgc agtgtccaag                                 
    
    W = A/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
LG/J
SM/J
ss320068148 CHEV_1_154637315 CHEVERUD SCREENING_POP f SNP T A
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs225077404 SNP T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:152665936 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr420541 regulatory region 420541 48 bp proximal
Rr420542 regulatory region 420542 151 bp proximal
Rr420543 regulatory region 420543 275 bp proximal
Tssr9422 transcription start site region 9422 1710 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support.
last database update
03/25/2025
MGI 6.24
The Jackson Laboratory