rs225079003 SNP Detail

Summary

• ID
  rs225079003
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465828 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGACTATCA GAACCAGACA
  CATTCCAAAG TCCCACAGAC CACTCTCACA GTTTATCCAC TTAAAATCCG CTGGGAAACC
  GAGTGGAAGA ACTTGAGTGA TTCTGAGGCA GTTAGGATGG CTGTAGCTCA AGATGGTCAT
  GTCAAGGTGA ATTTATAAAG AATACTGTAA ATACTACTAA CTAAAGGGCA AAATAGGGCA
  Y
  CAGTTTTCTT TGGAATTGGA ATTATAGATA GTTTGAGCTG CCATCTAAGT GGGAATTGAA
  CCCAGGTCCT CTGGAAGAGC AGCAGGTGCT CTTAACCACC AAGCCATCTC TCCAGACCTT
  GCCCATTTAT CTCAATCAAA TATTATGTGT AGTCATTGAG GTCAGCTTCA GACCTTCCAG
  GCATCTGAGT TTTCAGATGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384072515	MGP_WTSI_11_83388504	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225079003					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384072515	MGP_WTSI_11_83388504	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465828 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	322 bp downstream
Tssr103715	transcription start site region 103715	272 bp downstream
Tssr103716	transcription start site region 103716	348 bp upstream
Tssr109677	transcription start site region 109677	1318 bp upstream
Tssr109678	transcription start site region 109678	937 bp upstream
Tssr109679	transcription start site region 109679	653 bp upstream
Tssr109680	transcription start site region 109680	402 bp upstream
Tssr109681	transcription start site region 109681	283 bp upstream
Tssr109682	transcription start site region 109682	8 bp upstream
Tssr109683	transcription start site region 109683	29 bp downstream
Tssr109684	transcription start site region 109684	55 bp downstream
Tssr109685	transcription start site region 109685	100 bp downstream
Tssr109686	transcription start site region 109686	163 bp downstream
Tssr109687	transcription start site region 109687	212 bp downstream
Tssr109688	transcription start site region 109688	259 bp downstream
Tssr109689	transcription start site region 109689	302 bp downstream
Tssr109690	transcription start site region 109690	315 bp downstream
Tssr109691	transcription start site region 109691	325 bp downstream
Tssr109692	transcription start site region 109692	356 bp downstream
Tssr109693	transcription start site region 109693	467 bp downstream
Tssr109694	transcription start site region 109694	861 bp downstream
Tssr109695	transcription start site region 109695	911 bp downstream
Tssr109696	transcription start site region 109696	1945 bp downstream