rs225082460 SNP Detail

Summary

• ID
  rs225082460
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:93612635 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTGGAAAA CAGTAGAGGA
  AGACATCCCA AATTTGACCT CTGGTCTCCA CATACATGTG CACATATGAG CACATACACC
  CACATGACTT GTGCATACAC ACACACACAC ACACACACAC ACACACGAAC TGAAAGGACA
  GTAAAAATTA GGTGTCAAAG TCAGGTAGAG AGTAAAGTCA AGTTCAAAAT GAAAAACCAA
  W
  AAAACAAAAA GAAAGAAAGA ACAGAAAAGA AGAAAGAAAA AGGTGACAGA CAAAAAACTA
  GAAAGCTAGT TCTGAAATTT AATTTTTTTA GGTAGAAAAA AATATAACAA AACATAATTT
  TCAATCAAGT AACTAAAGTG TAGTTGACAT TGAAATGGAT AGAATAGAAA ATACTATAAA
  ACATTTTTTT TAAAGAAAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375603844	MGP_WTSI_8_95409906	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	T	A	A	A	A	T	T	T	T	T	T	T	T	T	A	T	T	T	A	A	A	T	T	T	A	A	A	A	A	A	T	A	A	T	T	T	A	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	RIIIS/J	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225082460					SNP	A	A	A	T	A	A	A	A	T	T	T	T	T	T	T	T	T	A	T	T	T	A	A	A	T	T	T	A	A	A	A	A	A	T	A	A	T	T	T	A	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375603844	MGP_WTSI_8_95409906	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:93612635 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lpcat2	lysophosphatidylcholine acyltransferase 2			Intron
				Noncoding-Transcript-Variant
Tssr78766	transcription start site region 78766			128 bp downstream
Tssr78767	transcription start site region 78767			1393 bp upstream
Tssr78768	transcription start site region 78768			1442 bp upstream