rs225093560 SNP Detail

Summary

• ID
  rs225093560
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:143907125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGTGAGCA CGCCAAACCT
  TTCCAGCAAG CCTAGGAAGA AAAACACTAC CACTAGGTCT CAATTTTATT TTATTAATGT
  TATCATTATT ATTATTTACT ATAAAAAGAA TTACAAGTCT TTAAACTGAC GGGTAGTCAG
  TGTTTCTCAC AAGGAGCACT AAGAATGAGT CACGGCGCTC TGCTCAAAAA AAGTTAAAAA
  S
  TGCTTACGTA AATATCATAA TTAGCCATCA CTAGAGAGGA ATAATTTCTC ACTTAACTGC
  ACTTTTATTT TTAAGTAAAC CTTTTGTCTC TGAGCAGCTA TGTGAGTCCC CTCCTAGCTC
  AGGGAAAACA CCTGAGCATT TTAGATACCC TTACTTTTAA CCTGAACCCC AAGCTGAGGC
  TACACTTAGA ATTTAATTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360062388	MGP_WTSI_3_143864328	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225093560					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360062388	MGP_WTSI_3_143864328	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:143907125 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13894	CpG island 13894	447 bp proximal
Lmo4	LIM domain only 4	Intron
Rr375847	regulatory region 375847	691 bp downstream
Rr406521	regulatory region 406521	1650 bp proximal
Rr586597	regulatory region 586597	1612 bp distal
Rr586598	regulatory region 586598	751 bp distal
Rr586599	regulatory region 586599	621 bp proximal
Rr586600	regulatory region 586600	958 bp proximal
Tssr35961	transcription start site region 35961	1974 bp upstream
Tssr35962	transcription start site region 35962	421 bp upstream
Tssr35963	transcription start site region 35963	551 bp downstream
Tssr35964	transcription start site region 35964	598 bp downstream
Tssr35965	transcription start site region 35965	936 bp downstream
Tssr35966	transcription start site region 35966	986 bp downstream
Tssr35967	transcription start site region 35967	1215 bp downstream