rs225094413 SNP Detail

Summary

• ID
  rs225094413
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:178166416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCACTTTGA TCCTCTCCCT
  GTTTTTTCAG CCACTCTAAA CATGTTTGTA TACCTGCTGA CTTGTCTACA AACTGGTAGT
  AACAAAAGGC TGGGATTTAG TAAAAAAAGA AAACACCTGT AGTTCTATTA CTTGGCAGAG
  TGAGGCAGAA GTATCAAGAG TTAAAAGCTA GCCTGGGCTA CTTAGTAAAT TCCAGGCTTA
  Y
  CTGGGTTGAA TACCAGACCC TATCTCAAAA AAGAAAAGAA AAAAAATTAT GATTTGTTTT
  CTGGCATTAA ATATGTTGTG TTCTTGAAAC TTTTATATAG AATTTAATTT CTACACTGGG
  GCCTTCCTGT GTAGATTGCA CCCAAGCTAT GCTTGGTGGT ACATGTGTAT AATTTCAACA
  CTTGGGAGAT ACAGGTAAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352535490	MGP_WTSI_1_180268982	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225094413					SNP	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	C	C	T	T	C	T	T	T	T	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352535490	MGP_WTSI_1_180268982	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:178166416 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1090	CpG island 1090	767 bp distal
Gm38300	predicted gene, 38300	750 bp upstream
Hnrnpu	heterogeneous nuclear ribonucleoprotein U	1054 bp upstream
Rr29068	regulatory region 29068	15 bp distal
Rr372516	regulatory region 372516	within coordinates
Tssr316	transcription start site region 316	1764 bp upstream
Tssr317	transcription start site region 317	1260 bp upstream
Tssr318	transcription start site region 318	1035 bp upstream
Tssr10387	transcription start site region 10387	1673 bp downstream
Tssr10388	transcription start site region 10388	1535 bp downstream
Tssr10389	transcription start site region 10389	949 bp downstream
Tssr10390	transcription start site region 10390	864 bp downstream
Tssr10391	transcription start site region 10391	653 bp downstream
Tssr15484	transcription start site region 15484	1733 bp upstream
Tssr15485	transcription start site region 15485	1679 bp upstream
Tssr15486	transcription start site region 15486	1598 bp upstream
Tssr15487	transcription start site region 15487	1532 bp upstream
Tssr15488	transcription start site region 15488	1199 bp upstream
Tssr15489	transcription start site region 15489	1157 bp upstream
Tssr15490	transcription start site region 15490	1118 bp upstream
Tssr15491	transcription start site region 15491	1090 bp upstream
Tssr15492	transcription start site region 15492	1057 bp upstream