rs225105127 SNP Detail

Summary

• ID
  rs225105127
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:40759154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGCATGAG AGAGTCCGCG
  GCTGGCAGCG GACACCGACT GCCCTCACTG TCCGAATCCG ATTCGGACCC CGAGCCCGAG
  CCATACGAAG CAGCTAGAGC TGCAATCGCA GCCGACATGA CTGCAACAGA TACTCTCTGC
  TAAGGCCAGG CCAAGGCGGA AGAAGCAGCG TCTCCCAGGT CCTGTCAGAT TGTCATGGAA
  Y
  TCGATATTTA CCTCCTTTAA AAAAAATCAT TTATAACTTC TCGAAAAAAA CTTTATTATT
  GAGATAACTG TATCAAAACT TGAGATTCAC AAACATTTAT CTAAAGAAGC ACAAGGGATT
  ACAACTATTT GTAACTTTCA GGACCTCGTT GATTAAAGAC CCAGTCCTGA GATGTGTTTG
  AAGCCTCGAG GACCTTCACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380132610	MGP_WTSI_10_40602964	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225105127					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380132610	MGP_WTSI_10_40602964	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:40759154 () rs orientation: forward

Symbol	Name	Function Class
Cdc40	cell division cycle 40	15 bp upstream
Cpgi1464	CpG island 1464	within coordinates
Rr401845	regulatory region 401845	80 bp upstream
Rr430263	regulatory region 430263	1605 bp distal
Rr430264	regulatory region 430264	143 bp proximal
Rr430265	regulatory region 430265	598 bp proximal
Rr430266	regulatory region 430266	680 bp proximal
Rr430267	regulatory region 430267	1578 bp proximal
Tssr93031	transcription start site region 93031	311 bp upstream
Tssr93032	transcription start site region 93032	335 bp upstream
Tssr93033	transcription start site region 93033	362 bp upstream
Tssr93034	transcription start site region 93034	462 bp upstream
Tssr93035	transcription start site region 93035	661 bp upstream
Tssr97391	transcription start site region 97391	28 bp upstream
Wasf1	WASP family, member 1	322 bp upstream