rs225105578 SNP Detail

Summary

• ID
  rs225105578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGAACTAT CTTTCTACTG
  CCCAAATTTT TTTATAGCAT AGGAGTCTTT TTAAAAAGAT TTATCTGCCG GGCATGGTGG
  CGCACGCCTT TAATCCCAGC ACTCGGGAGG CAGAGGCAGG CGGATTTCTG AGTTCGAGGC
  CAGCCTGGTC TACAAAGTGA GTTCCAGGAC AGCCAGGGCT ATACAGAGAA ACCCTGTCTC
  R
  AAAAACCAAA AAATAAAAAT AAAAAATGAA AATATTTATT TATCTATTAC ACACACACAC
  ACACTGTCCC TATCTTCAGA CACACCAGAA GGAGGCATCA GATCCTATTA CAAATGATTG
  TAAGCCACTG TGTAGTTGCT GGGAATTGAA CTTAGGACCT TTGGAAGAGG TTATTGCAGA
  GAATCTGCGT TGAGGTTCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388615	CHEV_7_116076606	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225105578					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	1174 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	158 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	1323 bp upstream
Rr400539	regulatory region 400539	1065 bp upstream
Rr652951	regulatory region 652951	389 bp distal
Rr652952	regulatory region 652952	835 bp proximal
Rr652953	regulatory region 652953	1055 bp proximal
Tssr68456	transcription start site region 68456	1313 bp upstream
Tssr68457	transcription start site region 68457	1425 bp upstream