rs225113591 SNP Detail

Summary

• ID
  rs225113591
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:88903429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCACAGGC CAGGCGGCAG
  GGCTTGAGGC TGCTGGTCAC ATGGTTTCTG AAGTCCAAAG TGCAAGGAGT GTTAGCACAT
  TAGTGCTCAG CTCGCTTTCT CCACTTTATA CAATTCAGCA TTCCAGCCAA GGACTAGAGC
  ATCCAGAGTG GACAGCTCCT CCCACCTCAA CCAATGGAAT CTTGAGGACC CCCCCCCCCC
  Y
  GCCAAGATGT GCTTTAACCC GACCCATCAC ATTGGGTTTT CCTCTCACCA TATGAAAATC
  ATTAAACCGT TACAATTTTC TACCAGGTTC CCTTAAAACC TTTAAAGAGA AAACACATTT
  ATTTATTCAG TATGGATACG TGTATGTATA TGTGCATGTG TGTGGACATA TGCACTCTGA
  TGTAGAGGCT AAGGTCAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	PWK/PhJ
ss384184076	MGP_WTSI_11_88873917	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	PWK/PhJ
rs225113591					SNP	T	T	T	T	T	T	T	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384184076	MGP_WTSI_11_88873917	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:88903429 () rs orientation: forward

Symbol	Name	Function Class
Trim25	tripartite motif-containing 25	within coordinates
Tssr104066	transcription start site region 104066	1694 bp downstream
Tssr104067	transcription start site region 104067	1626 bp downstream