rs225116444 SNP Detail

Summary

• ID
  rs225116444
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3122506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGACCATA ATGGAATACA
  CTAGAGACCT TAACTGCGAG AGTTCAAGGT CAGGGCCTGA GGAGCGAGGC AGCTCAGCAG
  GTAAGAACAC TGGTTGCTTT TGCAGAGGAT CCCTGCTCAG TTCCCAGCAC CCACACAGTG
  GCTCACAACA GTCTGCAATT CCAGCTCCAG GGGATCCAAT ATTTTCATCT GATCTCGGTG
  K
  ACACCAAACA CACACATGTT GTGCATACAT ATGGGAAAGC AAAATACTCA TACATAAAAT
  AATTTTCTAG CCGGGCAGTG ATGGCACATG CCTTTAATCC CAGCACTCAG AAGGCAGAGG
  CAGGTGGATT TCTGAGTTCG AGGCCAGCCT GGTCTACAGA GAGAGTTCCA GGGCAGCCAG
  GGCTACGCAG AGAAACCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	SPRET/EiJ
ss382237231	MGP_WTSI_11_3072509	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	SPRET/EiJ
rs225116444					SNP	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382237231	MGP_WTSI_11_3072509	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3122506 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	within coordinates
Cpgi2458	CpG island 2458	758 bp proximal
Rr441481	regulatory region 441481	56 bp distal
Rr441482	regulatory region 441482	1224 bp distal
Rr441483	regulatory region 441483	290 bp distal
Rr441484	regulatory region 441484	165 bp proximal
Rr441485	regulatory region 441485	685 bp proximal
Rr441486	regulatory region 441486	1467 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	289 bp downstream
Tssr106449	transcription start site region 106449	813 bp downstream