rs225117543 SNP Detail

Summary

• ID
  rs225117543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:11684840 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCTGGT AAACAGTACA
  GCGTGAATTT TGCCGCTTTA TGGCGCAGAA GCACTTCTGT GTGCAGGTTA ACTAAGGCGA
  CCACGAGAAG GTGGATTCCC AGCGACTACC TGCACCCAAC TGCATGCCAC CTTTCAACAC
  CAGGAGAACG GGGCCAATTA GCGCAGCTTA CACAGGACGG TCCCGGTGGA GAGGGGGCCG
  R
  TAGGCATGGC CGCGACCCCG CCGTCGGCCA TAGCAGGTGC AGACTTGACA CCCCCGGCTA
  CGAGGGCAGC GCCCATCCCT CCGTGCCTTC AGGGGGCCCT GCACCCGGTT TCCATTAGAC
  AGAAGCGCGA GGCCCCCAGT TTCCTCCTCG CCACGATTCC CGAAGCCCGG CGGCCTCCGC
  GCAAACGGCC TCAACTGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322492722	CHEV_8_11634840	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225117543					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:11684840 () rs orientation: forward

Symbol	Name	Function Class
Ankrd10	ankyrin repeat domain 10	within coordinates
Cpgi20087	CpG island 20087	within coordinates
Gm64331	predicted gene, 64331	530 bp upstream
Mir7238	microRNA 7238	854 bp downstream
Rr186041	regulatory region 186041	within coordinates
Rr400761	regulatory region 400761	878 bp upstream
Tssr80389	transcription start site region 80389	186 bp downstream
Tssr80390	transcription start site region 80390	212 bp downstream
Tssr80391	transcription start site region 80391	801 bp downstream
Tssr80392	transcription start site region 80392	853 bp downstream
Tssr80393	transcription start site region 80393	889 bp downstream
Tssr80394	transcription start site region 80394	905 bp downstream