rs225120551 SNP Detail

Summary

• ID
  rs225120551
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:28805733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGTGTTATT TTAACATTAA AACAAATAGA
  GGAAAATGAA AGTATGTGCT GTTTATCTTC AAATGAGGAT GTTTTGTTAT TCAGGTTAAA
  CTTACTGCCC TCTCAGTGAG TTAGGATTAA ATCGTCTACT TGTATATTCA GTAAAAGAGT
  W
  TACTCCtttt ctgagaagtt gtcctggaac tcattatgta gcccattctg gccttgaatg
  catcatcatc tgtcttagtt ttcTAGGCAG ATATTATCAC TTGAATTGCT TATCTCATGC
  CTCCTCCATT TCCCCATCAC CTACAACTTA                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323609594	CHEV_11_28755733	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225120551					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:28805733 () rs orientation: forward

Symbol	Name	Function Class
Efemp1	epidermal growth factor-containing fibulin-like extracellular matrix protein 1	within coordinates
Rr246450	regulatory region 246450	1532 bp distal
Tssr3451	transcription start site region 3451	1960 bp downstream
Tssr3452	transcription start site region 3452	1935 bp downstream
Tssr100687	transcription start site region 100687	1411 bp downstream