rs225122601 SNP Detail

Summary

• ID
  rs225122601
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128581900 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGATCACCG TAAACAAAGA
  TTCTGTTTAA ATAACACTTG TGTCCCAAAC TACTCTTCGA ATCAGTTCTT GCATAAAGTC
  AAAGACTCTC CTACATTAAA CAAGCCATAG GTTGGAATAT GATTTTTCCA ATAAGGAATA
  TGAAGAGAAA CTCAGACTTT TATTTTATTT CGGTTTTTCA AGACAGGATT TCGATGTGTC
  R
  CCCTGGCTGT CCTGGAACTT ACTCTGTAGA CCAGGTGGGC CTCGAACTCG AACTCAGAAA
  TCCGCCTGCC TCTGCCTCCC AAGTGCTGGG ATTAAAGGGT GTGCCACTGC CTGGCAGGAG
  CTCAGAGTTA CTGTAACATC TTTGTACCTT ATTTTGGATC TGTGTTTCGC CATATTCTCA
  GGTCAGTTGT TGGTGGGGGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382210089	MGP_WTSI_10_128183087	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225122601					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382210089	MGP_WTSI_10_128183087	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128581900 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	1808 bp distal
Cpgi2419	CpG island 2419	1671 bp proximal
Dgka	diacylglycerol kinase, alpha	1176 bp upstream
Gm31504	predicted gene, 31504	149 bp downstream
Gm66065	predicted gene, 66065	within coordinates
Pym1	PYM homolog 1, exon junction complex associated factor	1858 bp upstream
Rr224483	regulatory region 224483	within coordinates
Rr224484	regulatory region 224484	1300 bp proximal
Rr385481	regulatory region 385481	1294 bp upstream
Rr402364	regulatory region 402364	1082 bp downstream
Tssr96440	transcription start site region 96440	1209 bp downstream
Tssr96441	transcription start site region 96441	1008 bp downstream
Tssr96442	transcription start site region 96442	797 bp downstream
Tssr96443	transcription start site region 96443	426 bp upstream
Tssr96444	transcription start site region 96444	1757 bp upstream
Tssr96445	transcription start site region 96445	1819 bp upstream
Tssr99945	transcription start site region 99945	1946 bp upstream
Tssr99946	transcription start site region 99946	1922 bp upstream
Tssr99947	transcription start site region 99947	1779 bp upstream
Tssr99948	transcription start site region 99948	1749 bp upstream
Tssr99949	transcription start site region 99949	1144 bp upstream
Tssr99950	transcription start site region 99950	973 bp upstream
Tssr99951	transcription start site region 99951	950 bp upstream
Tssr99952	transcription start site region 99952	946 bp upstream
Tssr99953	transcription start site region 99953	909 bp upstream
Tssr99954	transcription start site region 99954	565 bp upstream
Tssr99955	transcription start site region 99955	532 bp upstream
Tssr99956	transcription start site region 99956	202 bp downstream
Tssr99957	transcription start site region 99957	269 bp downstream
Tssr99958	transcription start site region 99958	1597 bp downstream
Tssr99959	transcription start site region 99959	1689 bp downstream