rs225125523 SNP Detail

Summary

• ID
  rs225125523
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:48530951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAGACTCAG GCTGGTCCAT CACATGGAGA
  AGTTCAAGGG AGATCAAATG GATACCGGGC ACCATTTGAC GGATTAGAAA AGCTAGGTCA
  CCACTGGCCT GCAGCCTAGC ACACTGAACG TCATCAAACA CGTATTCATT AAGGACTTTG
  M
  ACTGTGATAC AGTGCAAAGA TGTGAACAAC AACAAAACTG TGCCTATACT TAGCCAGCCC
  AGGCTGGAAG GGTGTGGACT GAACTGGGAT TGCTTTGTCT GAGTGCACAG AAAGCATCAG
  GAGATGGAAA ACCCTCCCAA TGTAGACATT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321793660	CHEV_6_48504016	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs225125523					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:48530951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17370	CpG island 17370	440 bp proximal
Gm67220	predicted gene, 67220	within coordinates
Gm67227	predicted gene, 67227	within coordinates
Lrrc61	leucine rich repeat containing 61	781 bp upstream
Rr399635	regulatory region 399635	501 bp upstream
Rr629686	regulatory region 629686	799 bp distal
Rr629687	regulatory region 629687	within coordinates
Rr629688	regulatory region 629688	746 bp proximal
Rr629689	regulatory region 629689	799 bp proximal
Tssr56137	transcription start site region 56137	759 bp upstream
Tssr56138	transcription start site region 56138	913 bp upstream
Tssr60734	transcription start site region 60734	640 bp downstream
Tssr60735	transcription start site region 60735	657 bp downstream
Tssr60736	transcription start site region 60736	700 bp downstream