rs225126840 SNP Detail

Summary

• ID
  rs225126840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49677406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAAATTAA TTGAACCTTA
  AACTGATGGT TAACCTCACA ATGCCTTATA AAGGCCAGTG TTTGGGATCT ATTTCCAAGA
  TGCCCTTAAT ACCCTGCCCA CCACTTCCCT CTCCCAATCA TCCTGGGTGT TGTAGCTGAT
  AATAATAAAG ACCTGTGTTA TCTAAATTGT TGGTATTGGA TGTTTTCTGA TTTTAGTCGT
  Y
  TTTACTGTGC TTGTTACCAT CGTTATCATT ATAACACTGT TTTCAAATAC CTGTTGTATA
  ATCAGAGAGC TTTCATATTG AGCCAGATAC AAATCTGTTA TAAAATGCTA CTGATTCAGA
  CCATGGACAG TGAATCTTGT TTGTCTGAAG AGTGAAAAGT CTAAGCCATA TATTATGTTT
  TTTTTTAAGC CTAATTCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss396238764	MGP_WTSI_16_49857156	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225126840					SNP	T	T	T	T	T	T	T	T	T	T	C	C	T	T	T	T	T	T	T	T	C	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss396238764	MGP_WTSI_16_49857156	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49677406 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	821 bp distal
Gm4633	predicted gene 4633	1997 bp upstream
Gm56621	predicted gene, 56621	1744 bp downstream
Gm60685	predicted gene, 60685	35 bp downstream
Rr370104	regulatory region 370104	890 bp downstream
Rr516742	regulatory region 516742	1667 bp distal
Rr516743	regulatory region 516743	1553 bp distal
Rr516744	regulatory region 516744	796 bp distal
Rr516745	regulatory region 516745	861 bp distal
Tssr4899	transcription start site region 4899	1927 bp downstream
Tssr4900	transcription start site region 4900	1777 bp downstream
Tssr4901	transcription start site region 4901	1656 bp downstream
Tssr4902	transcription start site region 4902	1546 bp downstream
Tssr4903	transcription start site region 4903	1237 bp downstream
Tssr138726	transcription start site region 138726	1943 bp downstream
Tssr138727	transcription start site region 138727	1913 bp downstream
Tssr138728	transcription start site region 138728	1683 bp downstream
Tssr138729	transcription start site region 138729	1321 bp downstream
Tssr138730	transcription start site region 138730	1287 bp downstream
Tssr138731	transcription start site region 138731	931 bp downstream
Tssr138732	transcription start site region 138732	793 bp downstream
Tssr138733	transcription start site region 138733	712 bp downstream
Tssr138734	transcription start site region 138734	474 bp downstream
Tssr138735	transcription start site region 138735	424 bp downstream
Tssr138736	transcription start site region 138736	837 bp upstream
Tssr141348	transcription start site region 141348	1731 bp upstream
Tssr141349	transcription start site region 141349	1471 bp upstream
Tssr141350	transcription start site region 141350	1200 bp upstream
Tssr141351	transcription start site region 141351	915 bp upstream
Tssr141352	transcription start site region 141352	663 bp upstream