rs225130653 SNP Detail

Summary

• ID
  rs225130653
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118733173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGAGTC CGAGGTGGGG
  CGGGGGGAAT CGAAGTTGTC AGACCGCCTC CAAGTGACAG CGGGACCCGG TGCTCCAGGC
  CTGGCCTGGT TGTGCCCTGC CAGTCCCGCC GCCTCTCCTC TGGGGCCGTG GACCGGGTCA
  GGTCGGGCCC AAGGGGCCCG CTCGGCGGTG AAGAGCCGGA CAAAGGCGGC GCCCGAGCGG
  S
  CGCAGGTAGT GGTATCGGGG AGGGGAGCGA GTCCGGGGCA CCCACCCCAA GGGGCGGGCA
  CGGGGCCGGA CTCTGCCCTG GGGACTGCGG GGGCCGGGGC GTCCACCGGG AGGAGCTGCG
  GCACTGGCTC TGGTCTGTAG CCGCAGATAT CCTCGCGGCT CCGGGAAGAG TGGGGTCGAC
  TTAGCCAAGG CGGAGGGGCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355419648	MGP_WTSI_2_118728428	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs225130653					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355419648	MGP_WTSI_2_118728428	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118733173 () rs orientation: forward

Symbol	Name	Function Class
Bahd1	bromo adjacent homology domain containing 1	Intron
Cpgi12098	CpG island 12098	within coordinates
Gm32957	predicted gene, 32957	1512 bp upstream
Gm75754	predicted gene, 75754	1893 bp upstream
Rr397220	regulatory region 397220	1188 bp downstream
Rr563367	regulatory region 563367	1229 bp distal
Rr563368	regulatory region 563368	1647 bp distal
Rr563369	regulatory region 563369	1379 bp distal
Rr563370	regulatory region 563370	within coordinates
Rr563371	regulatory region 563371	1049 bp distal
Rr563372	regulatory region 563372	591 bp distal
Rr563373	regulatory region 563373	139 bp distal
Rr563374	regulatory region 563374	333 bp proximal
Tssr19588	transcription start site region 19588	1289 bp downstream
Tssr19589	transcription start site region 19589	1204 bp downstream
Tssr19590	transcription start site region 19590	1075 bp downstream
Tssr19591	transcription start site region 19591	1029 bp downstream